8,454 agent tools in 7 subcategories. See them all in one list ↓
1,925 tools
1,839 tools
1,505 tools
1,170 tools
1,029 tools
556 tools
430 tools
| Tool | Stars | Last update | License | |
|---|---|---|---|---|
| scaffold-exercises Create exercise directory structures with sections, problems, solutions, and explainers that pass linting. Use when user wants to scaffold exercises, SkillInstall · skills CLI | 323,337 | MIT | ||
| clinical-case-report Structured medical case presentation for clinical rounds, conferences, and documentation. Generates SOAP-format or narrative case reports with physiol SkillInstall · skills CLI | 107,550 | Apache-2.0 | ||
| hps-academic-paper A review deck on compositional generalization in large language models — the field map, the gap, the evidence, and open questions. Built as a decision SkillInstall · skills CLI | 107,550 | Apache-2.0 | ||
| hps-memphis-pop A pop-culture retrospective on how 1980s design language shaped today's apps — the scenes, the turning point, and the takeaway. Built as a decision-gr SkillInstall · skills CLI | 107,550 | Apache-2.0 | ||
| hps-retro-tv A family history told through five decades of home movies — the opening question, the eras, and what the footage reveals. Built as a decision-grade st SkillInstall · skills CLI | 107,550 | Apache-2.0 | ||
| html-ppt-zhangzara-cartesian An economics senior thesis on the employment effects of local minimum-wage increases — identification strategy, evidence, and limitations. Built as a SkillInstall · skills CLI | 107,550 | Apache-2.0 | ||
| html-ppt-zhangzara-grove A municipal urban-tree-canopy policy proposal — the public need, the evidence, the options, and the funding decision. Built as a decision-grade policy SkillInstall · skills CLI | 107,550 | Apache-2.0 | ||
| html-ppt-zhangzara-monochrome A grant proposal on CRISPR base-editing for sickle-cell disease — the hypothesis, the approach, the milestones, and the risk. Built as a decision-grad SkillInstall · skills CLI | 107,550 | Apache-2.0 | ||
| html-ppt-zhangzara-peoples-platform A public-transit funding proposal for a city council — ridership need, the plan, the risk controls, and the ask. Built as a decision-grade policy brie SkillInstall · skills CLI | 107,550 | Apache-2.0 | ||
| html-ppt-zhangzara-pin-and-paper A field-biology capstone on urban pollinator decline — the survey design, the data, the contribution, and the caveats. Built as a decision-grade cours SkillInstall · skills CLI | 107,550 | Apache-2.0 | ||
| html-ppt-zhangzara-scatterbrain A design-school graduation project: a civic wayfinding system for a transit hub — the brief, the process, and the outcome. Built as a decision-grade c SkillInstall · skills CLI | 107,550 | Apache-2.0 | ||
| html-ppt-zhangzara-stencil-tablet A workplace-safety compliance review for a manufacturing regulator — findings, the evidence chain, and the corrective mandate. Built as a decision-gra SkillInstall · skills CLI | 107,550 | Apache-2.0 | ||
| last30days Recent community and social trend research over the last 30 days. Use when the brief asks what people are saying now, recent sentiment, community reac SkillInstall · skills CLI | 107,550 | Apache-2.0 | ||
| World Monitor Real-time global intelligence on conflict, markets, energy, trade, shipping and cyber. 97 tools. MCP serverVerified domain · worldmonitor.appRemoteSign-in needed | 90,571 | AGPL-3.0 | ||
| addresszen-automation Automate Addresszen tasks via Rube MCP (Composio). Always search tools first for current schemas. SkillInstall · skills CLI | 79,451 | — | ||
| ambee-automation Automate Ambee tasks via Rube MCP (Composio). Always search tools first for current schemas. SkillInstall · skills CLI | 79,451 | — | ||
| ambient-weather-automation Automate Ambient Weather tasks via Rube MCP (Composio). Always search tools first for current schemas. SkillInstall · skills CLI | 79,451 | — | ||
| battlenet-automation Automate Battlenet tasks via Rube MCP (Composio). Always search tools first for current schemas. SkillInstall · skills CLI | 79,451 | — | ||
| beeminder-automation Automate Beeminder tasks via Rube MCP (Composio). Always search tools first for current schemas. SkillInstall · skills CLI | 79,451 | — | ||
| blackboard-automation Automate Blackboard tasks via Rube MCP (Composio). Always search tools first for current schemas. SkillInstall · skills CLI | 79,451 | — | ||
| bolt-iot-automation Automate Bolt Iot tasks via Rube MCP (Composio). Always search tools first for current schemas. SkillInstall · skills CLI | 79,451 | — | ||
| canvas-automation Automate Canvas tasks via Rube MCP (Composio). Always search tools first for current schemas. SkillInstall · skills CLI | 79,451 | — | ||
| cdr-platform-automation Automate Cdr Platform tasks via Rube MCP (Composio). Always search tools first for current schemas. SkillInstall · skills CLI | 79,451 | — | ||
| census-bureau-automation Automate Census Bureau tasks via Rube MCP (Composio). Always search tools first for current schemas. SkillInstall · skills CLI | 79,451 | — | ||
| coassemble-automation Automate Coassemble tasks via Rube MCP (Composio). Always search tools first for current schemas. SkillInstall · skills CLI | 79,451 | — | ||
| college-football-data-automation Automate College Football Data tasks via Rube MCP (Composio). Always search tools first for current schemas. SkillInstall · skills CLI | 79,451 | — | ||
| dovetail-automation Automate Dovetail tasks via Rube MCP (Composio). Always search tools first for current schemas. SkillInstall · skills CLI | 79,451 | — | ||
| exist-automation Automate Exist tasks via Rube MCP (Composio). Always search tools first for current schemas. SkillInstall · skills CLI | 79,451 | — | ||
| felt-automation Automate Felt tasks via Rube MCP (Composio). Always search tools first for current schemas. SkillInstall · skills CLI | 79,451 | — | ||
| ulw-research Runs maximum-saturation research with a cooperating team, claim-graph gating, and a cited, QA'd deliverable. Use when the user explicitly asks for res SkillInstall · skills CLI | 70,897 | — | ||
| 13c-metabolic-flux Estimates intracellular metabolic fluxes from steady-state carbon-13 isotope-tracing measurements using validated atom maps, mfapy isotope simulation, SkillInstall · skills CLI | 57,090 | MIT | ||
| adaptyv Uses the Adaptyv Bio Foundry API and Python SDK to design protein characterization experiments, estimate costs, submit sequences, monitor laboratory p SkillInstall · skills CLI | 57,090 | MIT | ||
| aeon This skill should be used for time series machine learning tasks including classification, regression, clustering, forecasting, anomaly detection, seg SkillInstall · skills CLI | 57,090 | MIT | ||
| alphagenome Looks up precomputed AlphaGenome Atlas effects for any GRCh38 single-nucleotide variant (AVI score with Phred and 18 SHAP feature attributions, plus r SkillInstall · skills CLI | 57,090 | MIT | ||
| analytical-method-validation Plans, executes, and documents validation, verification, and transfer of analytical procedures under the governing framework - ICH Q2(R2) and Q14, USP SkillInstall · skills CLI | 57,090 | MIT | ||
| anndata Handles annotated matrices in single-cell analysis, .h5ad and Zarr files, and integration with the scverse ecosystem. This is the data format skill—fo SkillInstall · skills CLI | 57,090 | MIT | ||
| arbor Applies Arbor Hypothesis Tree Refinement to research artifacts with repeatable evaluators, including model training, agent harnesses, data synthesis a SkillInstall · skills CLI | 57,090 | MIT | ||
| arboreto Infers candidate gene regulatory networks from bulk or single-cell expression data using AertsLab Arboreto GRNBoost2 and GENIE3. Use for transcription SkillInstall · skills CLI | 57,090 | MIT | ||
| astropy Core Python library for astronomy and astrophysics workflows that need Astropy APIs, including units/quantities, coordinates, FITS I/O, tables, time s SkillInstall · skills CLI | 57,090 | MIT | ||
| benchling-integration Benchling Python SDK and REST API integration for registry entities, inventory, ELN entries, workflows, Benchling Apps, and Data Warehouse queries. Us SkillInstall · skills CLI | 57,090 | MIT | ||
| bgpt-paper-search Searches BGPT scientific papers by topic or DOI and retrieves claim-level evidence extracted from full text, including experiments, reported statistic SkillInstall · skills CLI | 57,090 | MIT | ||
| bids Organizes, queries, validates, and converts Brain Imaging Data Structure (BIDS) datasets. Supports organizing neuroscience and biomedical data (MRI, E SkillInstall · skills CLI | 57,090 | MIT | ||
| biopython Provides Biopython workflows for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entr SkillInstall · skills CLI | 57,090 | MIT | ||
| bioservices Provides a Python interface to bioinformatics services including UniProt, KEGG, ChEMBL, Reactome, QuickGO, and UniChem. Used for cross-database protei SkillInstall · skills CLI | 57,090 | MIT | ||
| bulk-rnaseq Prepares bulk RNA-seq FASTQ, Salmon, STAR or featureCounts output for gene-level differential expression. Covers nf-core/rnaseq and standalone quantif SkillInstall · skills CLI | 57,090 | MIT | ||
| cantera Runs Cantera homogeneous chemical reactors and evaluates ignition delay with mechanism provenance, conservation checks, and numerical refinement. Use SkillInstall · skills CLI | 57,090 | MIT | ||
| cellprofiler Runs reproducible CellProfiler microscopy pipelines for nuclear segmentation, cell counts, and per-object fluorescence measurements. Supports image/ch SkillInstall · skills CLI | 57,090 | MIT | ||
| cellxgene-census Queries the CZ CELLxGENE Census programmatically for versioned public single-cell and spatial transcriptomics data. Use when you need population-scale SkillInstall · skills CLI | 57,090 | MIT | ||
| cirq Google quantum computing framework. Use when targeting Google Quantum AI hardware, designing noise-aware circuits, or running quantum characterization SkillInstall · skills CLI | 57,090 | MIT | ||
| citation-management Comprehensive citation management for academic research. Search OpenAlex, PubMed, and Google Scholar for papers, extract accurate metadata, validate c SkillInstall · skills CLI | 57,090 | MIT | ||
| clinical-decision-support Prepares and validates research-only clinical decision-support evaluation, evidence-profile, cohort, survival, biomarker/model, privacy, and governanc SkillInstall · skills CLI | 57,090 | MIT | ||
| clinical-reports Creates safety-bounded draft structures and runs local deterministic checks for clinical case, diagnostic, trial, safety, and aggregate research repor SkillInstall · skills CLI | 57,090 | MIT | ||
| cobrapy Performs constraint-based metabolic modeling with COBRApy, including FBA, pFBA, FVA, gene knockouts, flux sampling, growth media, production envelopes SkillInstall · skills CLI | 57,090 | MIT | ||
| folklore-variant-evidence Retrieves ClinGen gene-disease validity assertions for a public gene or disease, and reviews source-linked public evidence and literature for one supp SkillInstall · skills CLI | 57,090 | MIT | ||
| literature-review Conducts systematic, scoping, and narrative literature reviews using PubMed, arXiv, bioRxiv, Semantic Scholar, and other appropriate sources. Use for SkillInstall · skills CLI | 57,090 | MIT | ||
| mageck Analyzes pooled CRISPR screen FASTQ reads and guide-count matrices with MAGeCK, validates guide libraries and contrasts, measures replicate and librar SkillInstall · skills CLI | 57,090 | MIT | ||
| marine-carbonate-chemistry Solves seawater carbonate chemistry with PyCO2SYS for chemical oceanography, ocean acidification, and marine carbon-cycle research. Use for paired tot SkillInstall · skills CLI | 57,090 | MIT | ||
| matchms Processes, cleans, compares, and searches tandem mass spectra with matchms. Use for MS/MS file I/O, metadata harmonization, peak filtering, spectral s SkillInstall · skills CLI | 57,090 | MIT | ||
| medchem Applies medicinal chemistry filters for compound triage, using drug-likeness rules (Lipinski, Veber, CNS), structural alert catalogs (PAINS, NIBR, ChE SkillInstall · skills CLI | 57,090 | MIT | ||
| molecular-dynamics Runs and analyzes molecular dynamics simulations with OpenMM and MDAnalysis. Sets up protein/small molecule systems, defines force fields, runs energy SkillInstall · skills CLI | 57,090 | MIT | ||
| molfeat Featurizes small molecules with Molfeat for QSAR/QSPR, chemical similarity, virtual screening, and molecular ML. Covers ECFP/MACCS fingerprints, RDKit SkillInstall · skills CLI | 57,090 | MIT | ||
| neurokit2 Builds and audits reproducible NeuroKit2 research workflows for physiological time-series preprocessing, event/interval analysis, multimodal alignment SkillInstall · skills CLI | 57,090 | MIT | ||
| neuropixels-analysis Analyzes Neuropixels extracellular recordings end-to-end with SpikeInterface. Covers loading SpikeGLX/Open Ephys/NWB data, preprocessing, drift/motion SkillInstall · skills CLI | 57,090 | MIT | ||
| nmrglue Processes calibrated one-dimensional complex NMR free-induction decays with nmrglue into phased spectra, peak candidates, and signed integration regio SkillInstall · skills CLI | 57,090 | MIT | ||
| nwb-conversion Converts neuroscience acquisition data to Neurodata Without Borders files with NeuroConv and PyNWB, preserves metadata and timebases, checks evidence- SkillInstall · skills CLI | 57,090 | MIT | ||
| onekgpd Queries the 1000 Genomes Project dataset (3,202 whole-genome-sequenced individuals, GRCh38) at the level of individual participants. Use when a questi SkillInstall · skills CLI | 57,090 | MIT | ||
| ontology-term-resolution Resolves free-text scientific labels to ontology term IDs and validates existing CURIEs against the EBI Ontology Lookup Service (OLS4). Also looks up SkillInstall · skills CLI | 57,090 | MIT | ||
| openpiv Performs Particle Image Velocimetry (PIV) analysis with OpenPIV. Use when extracting velocity fields from PIV image pairs, analyzing fluid dynamics or SkillInstall · skills CLI | 57,090 | MIT | ||
| paperclip Searches and reads biomedical papers, FDA/PMDA/EMA documents, clinical trials, and protein records with the GXL Paperclip CLI and Python SDK. Supports SkillInstall · skills CLI | 57,090 | MIT | ||
| paperzilla Reads projects, searches project feeds, and retrieves recommendations and canonical papers in Paperzilla through the pz CLI. Supports recent recommend SkillInstall · skills CLI | 57,090 | MIT | ||
| pathml Supports local computational pathology research with PathML: slide loading and tiling, preprocessing and QC, h5path storage, multiplex quantification, SkillInstall · skills CLI | 57,090 | MIT | ||
| pathogen-variant-surveillance Queries public GenSpectrum LAPIS data for pathogen genomic surveillance, current lineage nomenclature, weekly sequence proportions, reporting delays, SkillInstall · skills CLI | 57,090 | MIT | ||
| pathway-enrichment Performs pathway and gene-set enrichment analysis on gene lists or ranked gene data and interprets the results. Used when the user has a set of genes SkillInstall · skills CLI | 57,090 | MIT | ||
| phylogenetics Builds and analyzes phylogenetic trees using MAFFT multiple sequence alignment, IQ-TREE maximum likelihood with ModelFinder and branch support, and Fa SkillInstall · skills CLI | 57,090 | MIT | ||
| pkpd-modeling Pharmacokinetic and pharmacodynamic modelling and simulation - non-compartmental analysis, compartmental and population PK, PK/PD and exposure-respons SkillInstall · skills CLI | 57,090 | MIT | ||
| primer-design Designs and audits PCR and RT-qPCR primers with Primer3, explicit thermodynamic conditions, reference-based off-target amplification searches, and tra SkillInstall · skills CLI | 57,090 | MIT | ||
| pybamm Simulates lithium-ion battery charge, discharge and rest experiments with PyBaMM, records parameter-set provenance, checks mesh and solver sensitivity SkillInstall · skills CLI | 57,090 | MIT | ||
| pycalphad Computes finite-temperature CALPHAD equilibria, phase fractions, and phase compositions from thermodynamic TDB databases using pycalphad. Use for allo SkillInstall · skills CLI | 57,090 | MIT | ||
| pydeseq2 Performs bulk RNA-seq differential expression analysis with PyDESeq2, including count validation, formula designs, explicit contrasts, Wald tests, FDR SkillInstall · skills CLI | 57,090 | MIT | ||
| pydicom Reads, inspects, writes, transforms, and preflights local DICOM datasets and pixel data. Applies to DICOM metadata, transfer syntaxes, compression plu SkillInstall · skills CLI | 57,090 | MIT | ||
| pyhealth Builds and validates PyHealth clinical machine-learning pipelines for EHR, signals, imaging, and medical codes. Use for PyHealth dataset loading, MIMI SkillInstall · skills CLI | 57,090 | MIT | ||
| pylabrobot Develops and reviews PyLabRobot lab-automation resources, liquid-handling plans, offline simulations, and supported-device integrations. Supports PyLa SkillInstall · skills CLI | 57,090 | MIT | ||
| pymatgen Analyzes, validates, converts, and transforms materials structures and computed materials data with pymatgen. Use for local phase diagrams, symmetry s SkillInstall · skills CLI | 57,090 | MIT | ||
| pyopenms Processes mass spectrometry data with pyOpenMS. Supports proteomics and metabolomics workflows—feature detection, peptide/protein identification, labe SkillInstall · skills CLI | 57,090 | MIT | ||
| pysam Provides Python/HTSlib workflows for genomic files. Used when reading, querying, filtering, or writing SAM/BAM/CRAM, VCF/BCF, FASTA/FASTQ, or tabix da SkillInstall · skills CLI | 57,090 | MIT | ||
| pytdc Provides Therapeutics Data Commons workflows through PyTDC for registry discovery, dataset access, task-aware splits, evaluator metrics, benchmark gro SkillInstall · skills CLI | 57,090 | MIT | ||
| qiime2-amplicon Processes paired-end 16S amplicon reads into QIIME 2 ASVs and taxonomy with retained artifact provenance. Checks paired FASTQ manifests, primer orient SkillInstall · skills CLI | 57,090 | MIT | ||
| qutip Simulate and audit closed and open quantum-system models with QuTiP 5, including deterministic, trajectory, steady-state, spectral, and phase-space wo SkillInstall · skills CLI | 57,090 | MIT | ||
| rdkit Cheminformatics toolkit for fine-grained molecular control. SMILES/SDF parsing, descriptors (MW, LogP, TPSA), fingerprints, substructure search, 2D/3D SkillInstall · skills CLI | 57,090 | MIT | ||
| relion Validates and executes RELION single-particle cryo-EM refinement and half-map postprocessing. Supports STAR optics/acquisition checks, particle-stack SkillInstall · skills CLI | 57,090 | MIT | ||
| relsa-severity-assessment Supports multivariate severity assessment and exploratory endpoint-time score forecasting for laboratory animal studies using the RELSA (RELative Seve SkillInstall · skills CLI | 57,090 | MIT | ||
| research-lookup Compiles current scholarly evidence for a scientific manuscript or research brief when the user explicitly asks to gather literature, references, back SkillInstall · skills CLI | 57,090 | MIT | ||
| rowan Rowan is a cloud-native molecular modeling and medicinal-chemistry workflow platform with a Python API. Use for pKa and macropKa prediction, conformer SkillInstall · skills CLI | 57,090 | MIT | ||
| scanpy Performs Scanpy single-cell RNA-seq QC, normalization, HVG selection, PCA/UMAP/t-SNE, clustering, exploratory marker ranking, pseudobulk preparation, SkillInstall · skills CLI | 57,090 | MIT | ||
| scholar-evaluation Provides qualitative-first, evidence-traceable developmental review of scholarly works and audit low-stakes research-assessment rubrics with optional SkillInstall · skills CLI | 57,090 | MIT | ||
| scientific-brainstorming Facilitates evidence-aware scientific ideation with independent generation, structured discussion, explicit assumptions, transparent evaluation, adver SkillInstall · skills CLI | 57,090 | MIT | ||
| scientific-critical-thinking Evaluates scientific claims and evidence quality. Applies to experimental design validity, biases and confounders, statistical interpretation, evidenc SkillInstall · skills CLI | 57,090 | MIT | ||
| scikit-bio Biological data toolkit. Sequence analysis, alignments, phylogenetic trees, diversity metrics (alpha/beta, UniFrac), ordination (PCoA), PERMANOVA, FAS SkillInstall · skills CLI | 57,090 | MIT | ||
| scikit-survival Builds, evaluates, and audits right-censored or competing-risk survival workflows with scikit-survival, including leakage-safe preprocessing, model se SkillInstall · skills CLI | 57,090 | MIT | ||
| scvelo Performs RNA velocity analysis with scVelo from spliced and unspliced single-cell RNA counts. Fits deterministic or dynamical models, examines gene ph SkillInstall · skills CLI | 57,090 | MIT | ||
| scvi-tools Fits probabilistic models for single-cell omics, including scVI batch integration, scANVI annotation, totalVI CITE-seq, MultiVI RNA/ATAC integration, SkillInstall · skills CLI | 57,090 | MIT | ||
| statistical-analysis Guided statistical analysis for research data - test selection, assumption checking, effect sizes, power analysis, Bayesian alternatives, and APA-form SkillInstall · skills CLI | 57,090 | MIT | ||
| statistical-power Calculates sample sizes and statistical power for study planning. Applies when someone asks "how many subjects/samples/replicates do I need", wants an SkillInstall · skills CLI | 57,090 | MIT | ||
| tamarind Provides access to a collection of open-source molecular design and structural biology tools on the Tamarind Bio platform, via its REST API or MCP ser SkillInstall · skills CLI | 57,090 | MIT | ||
| tellurium Simulates biochemical kinetic models from SBML or Antimony with Tellurium and libRoadRunner, checks model units, compares deterministic parameter pert SkillInstall · skills CLI | 57,090 | MIT | ||
| tiledbvcf Stores and retrieves genomic variant calls with TileDB-VCF. Use for indexed single-sample VCF/BCF ingestion, incremental cohorts, region and sample qu SkillInstall · skills CLI | 57,090 | MIT | ||
| torchdrug Builds and troubleshoots TorchDrug 0.2.1 workflows for molecular graphs, property prediction, self-supervised pretraining, molecule generation, retros SkillInstall · skills CLI | 57,090 | MIT | ||
| treatment-plans Formats and structurally validates local treatment-plan documentation after clinical decisions have already been supplied and verified by authorized l SkillInstall · skills CLI | 57,090 | MIT | ||
| uncertainty-and-units Tracks physical units and propagates measurement uncertainty in scientific calculations using pint and uncertainties. Use for unit conversion and dime SkillInstall · skills CLI | 57,090 | MIT | ||
| nature-academic-search Search literature across sources, verify or manage citations, and build MeSH strategies or citation-impact audits. Use for 文献检索、引文核对、参考文献管理、严格他引 and e SkillInstall · skills CLI | 53,478 | Apache-2.0 | ||
| nature-citation Find and verify Nature/CNS-family literature supporting manuscript claims, with claim-to-source mapping and reference-manager export. Use for Nature系列 SkillInstall · skills CLI | 53,478 | Apache-2.0 | ||
| nature-data Draft or audit manuscript Data/Code Availability statements, dataset access routes, repository plans, and FAIR metadata. Use for 数据可用性声明、数据共享、数据仓库选择 a SkillInstall · skills CLI | 53,478 | Apache-2.0 | ||
| nature-downloader Use when a user needs lawful academic full text, CNKI institutional access, English OA retrieval, publisher API access, institutional browser fallback SkillInstall · skills CLI | 53,478 | Apache-2.0 | ||
| nature-literature-pipeline Complete automated literature discovery pipeline: multi-source search → six-dimension scoring → fine reading → formatted delivery → archival. Combines SkillInstall · skills CLI | 53,478 | Apache-2.0 | ||
| nature-paper-card Build a structured deep-reading Paper Card for one scientific paper, analysing methods, experiment-to-claim evidence, limitations, and research ideas. SkillInstall · skills CLI | 53,478 | Apache-2.0 | ||
| nature-paper-xray Read one supplied paper closely enough to reconstruct how its authors actually got there, rather than restating what the abstract claims. Use for 精读论文 SkillInstall · skills CLI | 53,478 | Apache-2.0 | ||
| nature-reader Create source-grounded Chinese-English paper readers with aligned text, figures, tables, and equations. Use for 全文翻译、中英文对照、论文精读 or source-linked quest SkillInstall · skills CLI | 53,478 | Apache-2.0 | ||
| nature-ref-verifier 对学术文献逐条执行多源交叉验证，逐字段对比作者、标题、年份、卷期、页码， 标记卷年/DOI年冲突、作者顺序异常、页码偏差等问题，输出结构化验证报告。 可批量处理整篇论文/开题报告的参考文献列表，也可单条校验，支持与 Zotero 同步修正。 SkillInstall · skills CLI | 53,478 | Apache-2.0 | ||
| nature-social-science 社会科学及相邻学科学术写作与选题论证工作台，覆盖选题构思、文献梳理、论证组织、学术表达四大要素。Use for 找论文题目/研究问题、把兴趣或宽泛主题变成可讨论的研究方向、文献综述与领域版图、区分"研究少"与真正未决的知识问题、设计证据路线与主张边界、新颖性审计与"审稿人2"式攻击、博士/论文可行性 SkillInstall · skills CLI | 53,478 | Apache-2.0 | ||
| math-proof Two skills for hard mathematics problems, each ending in a self-contained proof.md: /math-proof:solo has the session work the problem itself in stages PluginAnthropic marketplace | 47,064 | Apache-2.0 | ||
| root-cause-capa Reads sensor history, inspection measurements, maintenance records and prior tickets onto one verified timeline, runs the pattern checks in code rathe SkillOfficial · AnthropicInstall · skills CLI | 47,064 | Apache-2.0 | ||
| exam-ready Activate this skill when a student provides study material (PDF or pasted notes) and a syllabus, and wants to prepare for an exam. Extracts key defini SkillInstall · skills CLI | 41,140 | MIT | ||
| geofeed-tuner Use this skill whenever the user mentions IP geolocation feeds, RFC 8805, geofeeds, or wants help creating, tuning, validating, or publishing a self-p SkillInstall · skills CLI | 41,140 | MIT | ||
| globestudio Creates, edits and embeds dotted world maps and animated 3D globes with Globestudio (globestudio.app), a free open source studio with 21 looks. Use wh SkillInstall · skills CLI | 41,140 | MIT | ||
| legacy-circuit-mockups Generate breadboard circuit mockups and visual diagrams using HTML5 Canvas drawing techniques. Use when asked to create circuit layouts, visualize ele SkillInstall · skills CLI | 41,140 | MIT | ||
| building-super-timelines-with-plaso Generate forensic super-timelines with Plaso's log2timeline.py, pinfo.py, psort.py, and psteal.py CLI tools (fusing file-system MACB, registry, EVTX, SkillInstall · skills CLI | 36,105 | Apache-2.0 | ||
| gws-classroom Google Classroom: Manage classes, rosters, and coursework. SkillInstall · skills CLI | 32,308 | Apache-2.0 | ||
| persona-researcher Organize research — manage references, notes, and collaboration. SkillInstall · skills CLI | 32,308 | Apache-2.0 | ||
| deep-learning-book Use when studying or applying Goodfellow, Bengio and Courville's Deep Learning, or asking if its advice still holds. Indexes all 20 chapters with a 20 SkillInstall · skills CLI | 29,773 | MIT | ||
| finding-google-skills Google platform decision and setup guidance, loaded on demand from Google's skill catalog. Use when a developer is choosing or setting up part of thei SkillInstall · skills CLI | 24,146 | Apache-2.0 | ||
| openGym Open-source gym & body-weight tracker, now in the App Store (iPhone + Apple Watch) and as an Android APK. Plan routines, log workouts, see which muscl MCP server | 21,384 | — | ||
| notebooklm Install, authenticate, troubleshoot, and operate Gemini Notebook through the notebooklm-py CLI or typed async Python API. Use for notebook and source SkillInstall · skills CLI | 20,224 | MIT | ||
| ablation-planner Use when main results pass result-to-claim (claim_supported=yes or partial) and ablation studies are needed for paper submission. SkillInstall · skills CLI | 19,162 | MIT | ||
| auto-paper-improvement-loop Autonomously improve a generated paper via GPT-6-Astra xhigh review → implement fixes → recompile, for 2 rounds. Use when user says \"改论文\", \"improve SkillInstall · skills CLI | 19,162 | MIT | ||
| auto-review-loop Autonomous multi-round research review loop. In Copilot CLI it defaults to the native complementary rubber-duck subagent with host-event model evidenc SkillInstall · skills CLI | 19,162 | MIT | ||
| citation-audit Zero-context verification that every bibliographic entry in the paper is real, correctly attributed, and used in a context the cited paper actually su SkillInstall · skills CLI | 19,162 | MIT | ||
| citation-crosscheck Double-blind bibliographic cross-check: one agent extracts each cited entry verbatim from the local .bib, a second independently re-fetches the same p SkillInstall · skills CLI | 19,162 | MIT | ||
| comm-lit-review Communications-domain literature review with Claude-style knowledge-base-first retrieval. Use when the task is about communications, wireless, network SkillInstall · skills CLI | 19,162 | MIT | ||
| experiment-plan Turn a refined research proposal or method idea into a detailed, claim-driven experiment roadmap. Use after `research-refine`, or when the user asks f SkillInstall · skills CLI | 19,162 | MIT | ||
| formula-derivation Structures and derives research formulas when the user wants to 推导公式, build a theory line, organize assumptions, turn scattered equations into a coher SkillInstall · skills CLI | 19,162 | MIT | ||
| grant-proposal Draft a structured grant proposal from research ideas and literature. Supports KAKENHI (Japan), NSF (US), NSFC (China, including 面上/青年/优青/杰青/海外优青/重点), SkillInstall · skills CLI | 19,162 | MIT | ||
| idea-creator Generate and rank research ideas given a broad direction. Use when user says "找idea", "brainstorm ideas", "generate research ideas", "what can we work SkillInstall · skills CLI | 19,162 | MIT | ||
| idea-discovery Workflow 1: Full idea discovery pipeline to go from a broad research direction to validated, pilot-tested ideas. Use when user says \"找idea全流程\", \"id SkillInstall · skills CLI | 19,162 | MIT | ||
| idea-discovery-robot Workflow 1 adaptation for robotics and embodied AI. Orchestrates robotics-aware literature survey, idea generation, novelty check, and critical review SkillInstall · skills CLI | 19,162 | MIT | ||
| integrity-forensics Run the Anti-Autoresearch integrity-forensics sweep (span-anchored evidence ledger → GPT auditors propose findings → a rules-only reporter that lists SkillInstall · skills CLI | 19,162 | MIT | ||
| kill-argument Two-thread adversarial review: a fresh reviewer constructs the strongest 200-word rejection memo, then a second fresh reviewer defends the paper point SkillInstall · skills CLI | 19,162 | MIT | ||
| novelty-check Verify research idea novelty against recent literature. Use when user says "查新", "novelty check", "有没有人做过", "check novelty", or wants to verify a rese SkillInstall · skills CLI | 19,162 | MIT | ||
| novelty-check Verify research idea novelty against recent literature. Use when user says \"查新\", \"novelty check\", \"有没有人做过\", \"check novelty\", or wants to verif SkillInstall · skills CLI | 19,162 | MIT | ||
| patent-novelty-check Assess patent novelty and non-obviousness against prior art. Use when user says \"专利查新\", \"patent novelty\", \"可专利性评估\", \"patentability check\", or SkillInstall · skills CLI | 19,162 | MIT | ||
| research-lit Search and analyze research papers, find related work, summarize key ideas. Use when user says "find papers", "related work", "literature review", "wh SkillInstall · skills CLI | 19,162 | MIT | ||
| research-lit Search and analyze research papers, find related work, summarize key ideas. Use when user says \"find papers\", \"related work\", \"literature review\ SkillInstall · skills CLI | 19,162 | MIT | ||
| research-refine Turn a vague research direction into a problem-anchored, elegant, frontier-aware, implementation-oriented method plan via iterative GPT-6-Astra review SkillInstall · skills CLI | 19,162 | MIT | ||
| research-review Get a deep critical review of research from a fresh Codex agent or a selected Gemini, Grok, or Claude Code reviewer. Use when user says \"review my re SkillInstall · skills CLI | 19,162 | MIT | ||
| TREK The most complete open-source travel planner: real-time collaboration, bookings, budgets, packing lists, journals, offline PWA, SSO and an AI-ready MC MCP server | 15,552 | — | ||
| academic-research-suite ARS-Codex research, writing, manuscript review, study screening, and experiments. Use for deep research, literature or systematic reviews, meta-analys SkillInstall · skills CLI | 14,529 | — | ||
| brainstorming-research-ideas Guides researchers through structured ideation frameworks to discover high-impact research directions. Use when exploring new problem spaces, pivoting SkillInstall · skills CLI | 14,526 | MIT | ||
| creative-thinking-for-research Applies cognitive science frameworks for creative thinking to CS and AI research ideation. Use when seeking genuinely novel research directions by lev SkillInstall · skills CLI | 14,526 | MIT | ||
| benchmark-paper-template Structures Benchmark and Evaluation papers using the five-pillar framework (Research Gap, Construction Pipeline, Evaluation Framework, Empirical Findi SkillInstall · skills CLI | 12,470 | — | ||
| deep-research Runs a deep, survey-grade literature investigation on a research topic: freezes research questions, searches from multiple adversarial perspectives, v SkillInstall · skills CLI | 12,470 | — | ||
| figure-designer Advises on the design of the three core figures in a technical paper: the Motivated Example (Figure 1), the Solution Overview (Methodology), and the E SkillInstall · skills CLI | 12,470 | — | ||
| idea-evaluator Evaluates a preliminary research idea against a five-dimension framework (Higher, Faster, Stronger, Cheaper, Broader) plus idea-lifecycle and student- SkillInstall · skills CLI | 12,470 | — | ||
| intro-drafter Drafts the Introduction prose for a technical paper, guided internally by a six-paragraph flowchart: background and running example, existing limitati SkillInstall · skills CLI | 12,470 | — | ||
| paper-polish Polishes existing academic prose while preserving the author's meaning: grammar and flow repair, tone calibration against evidence strength, AI-tone r SkillInstall · skills CLI | 12,470 | — | ||
| paper-writer Drafts publishable paper prose from the author's own materials, from a single paragraph to a full manuscript, across STEM and non-STEM fields. Every f SkillInstall · skills CLI | 12,470 | — | ||
| pre-submission-reviewer Runs a pre-submission review of a technical paper across five dimensions: macro logic, writing details, English grammar, LaTeX formatting, and figure SkillInstall · skills CLI | 12,470 | — | ||
| rebuttal-guidance Provides actionable peer-review rebuttal guidance (not full rebuttal prose) using conditional persuasion P(Z|X,Y): match reviewer mindset X, recommend SkillInstall · skills CLI | 12,470 | — | ||
| tech-paper-template Structures a technical paper's full logical skeleton using a thinking-template table (research background, limitations, key idea or goal, challenges, SkillInstall · skills CLI | 12,470 | — | ||
| paper-analysis-assistant 其他高等院校教师与数据科学家在追踪前沿学术时，当需要深度解析arXiv论文，用此技能可一键下载PDF并自动生成词频分析、双人播客、交互式网页、PPT演示与总结图，将数小时的文献阅读转化为多媒体内容，效率提升十倍！ SkillInstall · skills CLI | 9,543 | — | ||
| story-long-scan 长篇网文扫榜。分析起点、番茄、晋江、七猫等平台排行榜与新书数据，提炼市场趋势与热门题材。触发方式：/story-long-scan、/长篇扫榜、「长篇什么火」「起点排行」「扫七猫新书」。 SkillInstall · skills CLI | 8,581 | MIT | ||
| story-short-scan 短篇网文扫榜。分析知乎盐言、七猫、黑岩、点众等平台热门短篇数据，捕捉风口题材。触发方式：/story-short-scan、/短篇扫榜、「短篇什么火」「知乎故事排行」。 SkillInstall · skills CLI | 8,581 | MIT | ||
| socratic-tutor Structured Socratic tutoring when the user explicitly asks to be taught, quizzed, or drilled to mastery on a topic: diagnostic placement, a skill map SkillInstall · skills CLI | 8,347 | MIT | ||
| research-synthesis Turn raw interview notes and feedback into themes, insights, and opportunity statements. Use when you have a pile of research and need to know what it SkillInstall · skills CLI | 8,014 | — | ||
| survey-design-advisor Decide whether a survey is the right tool, then shape it. Use when you're about to send a survey and want to learn something real instead of collectin SkillInstall · skills CLI | 8,014 | — | ||
| ljg-book Explain a whole book to readers without specialist knowledge: what it follows, how its main threads connect, where it ends, and how its evidence or ev SkillInstall · skills CLI | 7,740 | MIT | ||
| ljg-learn Deep concept anatomist that deconstructs any concept through 8 exploration dimensions (history, dialectics, phenomenology, linguistics, formalization, SkillInstall · skills CLI | 7,740 | MIT | ||
| ljg-paper Explain research papers to readers without a specialist background: what the paper studies, what the authors contribute, how the findings follow, and SkillInstall · skills CLI | 7,740 | MIT | ||
| project-guide 中文项目导学、源码课程与项目面经技能：基于本地项目仓库、项目描述或技术材料，按需生成源码课程与理解题，或生成 导学-{简称}.md、面经-{简称}.md 及交接摘要；当用户输入“/project-guide”、要求项目导学、源码课程、按调用链展开课程、课程练习、项目复盘、项目面经或 STAR 题库时 SkillInstall · skills CLI | 6,394 | MIT | ||
| sn-deep-research 用于用户请求深度研究、系统性研究、竞品分析、方案对比、趋势分析或事实核查时。**遇到以下任一情况就主动使用本 skill，不要自行搜几条就回答**：①用户出现触发词：深度研究 / 深度调研 / 深入研究 / 全面研究 / 系统研究 / 调研 / 调查 / 尽调 / 行业研究 / 市场研究 / 竞品分 SkillInstall · skills CLI | 6,079 | MIT | ||
| sn-deepresearch-cli 一键启用 SenseNova-Skills-DeepResearch，用于行业与市场研究、竞品分析、政策或技术调研、商业尽调、趋势分析、方案对比、事实核查，以及研究报告、白皮书等交付场景。用户提出深度研究、调研、调查、尽调、research/deepresearch，或任务需要跨来源取证、多维度比较 SkillInstall · skills CLI | 6,079 | MIT | ||
| sn-report-format-discovery 用于用户希望推荐研究成品形式，或最终形式无法从需求中直接判断时。把需求解析为一个简短的 format 字符串，不创建格式文件或 schema。 SkillInstall · skills CLI | 6,079 | MIT | ||
| sn-research-report 用于撰写或组织研究报告结构。按读者认知任务（全景/对比/调查/时序）和领域惯例（学术/医疗/法律/政策）选择报告模板。 SkillInstall · skills CLI | 6,079 | MIT | ||
| astropy Comprehensive Python library for astronomy and astrophysics. This skill should be used when working with astronomical data including celestial coordin SkillInstall · skills CLI | 5,951 | MIT | ||
| citation-management Comprehensive citation management for academic research. Search Google Scholar and PubMed for papers, extract accurate metadata, validate citations, a SkillInstall · skills CLI | 5,951 | MIT | ||
| exploratory-data-analysis Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should be used when analyzing any scient SkillInstall · skills CLI | 5,951 | MIT | ||
| literature-review Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill sh SkillInstall · skills CLI | 5,951 | MIT | ||
| matlab MATLAB and GNU Octave numerical computing for matrix operations, data analysis, visualization, and scientific computing. Use when writing MATLAB/Octav SkillInstall · skills CLI | 5,951 | MIT | ||
| matplotlib Low-level plotting library for full customization. Use when you need fine-grained control over every plot element, creating novel plot types, or integ SkillInstall · skills CLI | 5,951 | MIT | ||
| networkx Comprehensive toolkit for creating, analyzing, and visualizing complex networks and graphs in Python. Use when working with network/graph data structu SkillInstall · skills CLI | 5,951 | MIT | ||
| paper-lookup Search 10 academic paper databases via REST APIs for research papers, preprints, and scholarly articles. Covers PubMed, PMC (full text), bioRxiv, medR SkillInstall · skills CLI | 5,951 | MIT | ||
| pymatgen Materials science toolkit. Crystal structures (CIF, POSCAR), phase diagrams, band structure, DOS, Materials Project integration, format conversion, fo SkillInstall · skills CLI | 5,951 | MIT | ||
| pymoo Multi-objective optimization framework. NSGA-II, NSGA-III, MOEA/D, Pareto fronts, constraint handling, benchmarks (ZDT, DTLZ), for engineering design SkillInstall · skills CLI | 5,951 | MIT | ||
| qutip Quantum physics simulation library for open quantum systems. Use when studying master equations, Lindblad dynamics, decoherence, quantum optics, or ca SkillInstall · skills CLI | 5,951 | MIT | ||
| research-writing-skill Chinese-first research paper writing, revision, polishing, section drafting, rebuttal, peer-review response, thesis prose improvement, and manuscript SkillInstall · skills CLI | 5,951 | MIT | ||
| scientific-toolkit-skill Research computing toolkit for optoelectronic information science and engineering, MATLAB/Octave, Python scientific analysis, signal processing, image SkillInstall · skills CLI | 5,951 | MIT | ||
| alphafold2 Predict protein structure for monomers and multimers with AlphaFold2 via the ColabFold runner (Mirdita et al. 2022, github.com/sokrypton/ColabFold; Al SkillInstall · skills CLI | 5,526 | Apache-2.0 | ||
| boltz Structure prediction for protein, nucleic-acid, and small-molecule complexes with Boltz-2 (Passaro & Wohlwend et al. 2025, github.com/jwohlwend/boltz) SkillInstall · skills CLI | 5,526 | Apache-2.0 | ||
| borzoi Predict genome-wide functional tracks (RNA-seq, CAGE, DNase, ChIP) from DNA sequence with Borzoi. Use this skill when: (1) Scoring the regulatory effe SkillInstall · skills CLI | 5,526 | Apache-2.0 | ||
| chai1 Structure prediction for protein, nucleic-acid, and small-molecule complexes with the Chai-1 foundation model (Chai Discovery 2024, github.com/chaidis SkillInstall · skills CLI | 5,526 | Apache-2.0 | ||
| diffdock Predict small-molecule binding poses with DiffDock-L (Corso et al. 2023/2024, github.com/gcorso/DiffDock) — blind diffusion docking that places a liga SkillInstall · skills CLI | 5,526 | Apache-2.0 | ||
| esmfold2 Biohub ESMFold2 / ESMFold2-Fast all-atom co-folding (Candido et al. 2026, github.com/Biohub/esm). Single-sequence and MSA modes; protein, DNA, RNA, li SkillInstall · skills CLI | 5,526 | Apache-2.0 | ||
| evo2 Score, embed, and generate DNA sequences with Evo 2, a long-context genomic foundation model. Use this skill when: (1) Computing per-nucleotide or per SkillInstall · skills CLI | 5,526 | Apache-2.0 | ||
| fair-esm2 Embed proteins with Meta AI's ESM-2 (`fair-esm` package). Use this skill when: (1) Extracting per-residue or per-sequence embeddings for downstream ML SkillInstall · skills CLI | 5,526 | Apache-2.0 | ||
| indication-dossier Generate a therapeutic indication dossier. Covers the patient population, epidemiology, disease biology, standard of care, regulatory precedent, and l SkillInstall · skills CLI | 5,526 | Apache-2.0 | ||
| ligandmpnn Inverse-fold a backbone with ligand, nucleic-acid, and metal context using LigandMPNN (Dauparas et al. 2023, github.com/dauparas/LigandMPNN). Reach fo SkillInstall · skills CLI | 5,526 | Apache-2.0 | ||
| literature-review Find, verify, and synthesize scientific literature — from "what's the seminal paper for X" through full multi-source reviews. Covers grounding claims SkillInstall · skills CLI | 5,526 | Apache-2.0 | ||
| open-science-case-demo-video Author the existing video.json screenplay and JavaScript animation bodies for Open-Science Research film. The application provides the session snapsho SkillInstall · skills CLI | 5,526 | Apache-2.0 | ||
| openfold3 Structure prediction using OpenFold3, an open-weights PyTorch reproduction of AlphaFold3 from the AlQuraishi Lab. Use this skill when predicting prote SkillInstall · skills CLI | 5,526 | Apache-2.0 | ||
| paper-narrative Judge and reshape the story told by an entire paper figure deck. Use when writing or revising a paper to derive a grounded brief from the manuscript a SkillInstall · skills CLI | 5,526 | Apache-2.0 | ||
| proteinmpnn Inverse-fold a protein backbone (PDB structure) into amino-acid sequence with ProteinMPNN (Dauparas et al. 2022, github.com/dauparas/ProteinMPNN). Rea SkillInstall · skills CLI | 5,526 | Apache-2.0 | ||
| solublempnn Inverse-fold a backbone with SolubleMPNN — ProteinMPNN retrained on a soluble-PDB subset (Dauparas et al. 2022) — for sequences biased toward cytosoli SkillInstall · skills CLI | 5,526 | Apache-2.0 | ||
| a1 VS-Enhanced Research Question Refiner - Prevents Mode Collapse and derives differentiated research questions Enhanced VS 3-Phase process: Modal questi SkillInstall · skills CLI | 5,013 | — | ||
| a2 VS-Enhanced Theoretical Framework Architect with Critique & Visualization Full VS 5-Phase process: Modal theory avoidance, Long-tail exploration, diff SkillInstall · skills CLI | 5,013 | — | ||
| a5 Agent A5 - Paradigm & Worldview Advisor - Philosophical foundations for research design. Covers ontology, epistemology, axiology, and methodology alig SkillInstall · skills CLI | 5,013 | — | ||
| abstract Reads the manuscript and notebooks to generate a structured abstract. Use when writing or updating the abstract. SkillInstall · skills CLI | 5,013 | — | ||
| academic-paper Academic paper writing skill with 12-agent pipeline. v2.5: Style Calibration (learn author's writing voice from past papers) + Writing Quality Check ( SkillInstall · skills CLI | 5,013 | — | ||
| academic-paper-reviewer Multi-perspective academic paper review with dynamic reviewer personas. Simulates 5 independent reviewers (EIC + 3 peer reviewers + Devil's Advocate) SkillInstall · skills CLI | 5,013 | — | ||
| academic-paper-verify Thoroughly verify all code, tables, figures, modeling decisions, and quantitative claims in an academic paper against its source R scripts and output SkillInstall · skills CLI | 5,013 | — | ||
| academic-writing Activate when the user is drafting any academic economics content from scratch (e.g., outlines, abstracts, introductions, data/methods/identification SkillInstall · skills CLI | 5,013 | — | ||
| ai-augmented-economist Integrate AI tools into economic research, teaching, and policy analysis with attention to privacy and reproducibility. SkillInstall · skills CLI | 5,013 | — | ||
| Answering Research Questions Main orchestration workflow for systematic literature research - search, evaluate, traverse, synthesize SkillInstall · skills CLI | 5,013 | — | ||
| assess-outline Assesses a research paper outline (.qmd file) against structured criteria from Kosuke Imai''s empirical research guide. Evaluates the abstract and sec SkillInstall · skills CLI | 5,013 | — | ||
| asymptotic-theory M-estimation, influence functions, and semiparametric efficiency theory for causal inference SkillInstall · skills CLI | 5,013 | — | ||
| b1 VS-Enhanced Literature Review Strategist - Comprehensive support for multiple review methodologies Full VS 5-Phase process: Prevents Mode Collapse and SkillInstall · skills CLI | 5,013 | — | ||
| b2 VS-Enhanced Evidence Quality Appraiser - Prevents Mode Collapse with context-adaptive quality assessment Enhanced VS 3-Phase process: Avoids automatic SkillInstall · skills CLI | 5,013 | — | ||
| bayesian-workflow Opinionated Bayesian modeling workflow with PyMC and ArviZ. Contains critical guardrails (nutpie sampler, prior/posterior predictive checks, LOO-PIT c SkillInstall · skills CLI | 5,013 | — | ||
| bib-check Cross-checks citation keys in index.qmd against references.bib, reporting missing, orphaned, and duplicate entries. Use when verifying citations. SkillInstall · skills CLI | 5,013 | — | ||
| Building Paper Screening Rubrics Collaboratively build and refine paper screening rubrics through brainstorming, test-driven development, and iterative feedback SkillInstall · skills CLI | 5,013 | — | ||
| c1 VS-Enhanced Quantitative Design Consultant with Materials & Sampling Enhanced VS 3-Phase process: Avoids obvious experimental designs, proposes contex SkillInstall · skills CLI | 5,013 | — | ||
| c2 VS-Enhanced Qualitative Design Consultant with Ethnography & Action Research Enhanced VS 3-Phase process: Avoids overused phenomenology, proposes cont SkillInstall · skills CLI | 5,013 | — | ||
| c3 Agent C3 - Mixed Methods Design Consultant Comprehensive mixed methods research design specialist covering sequential, concurrent, embedded, and multi SkillInstall · skills CLI | 5,013 | — | ||
| c5 Meta-Analysis Master with Data Integrity, Effect Size, Error Prevention & Sensitivity Multi-gate validation and workflow orchestration for meta-analys SkillInstall · skills CLI | 5,013 | — | ||
| causal-inference Production-grade Bayesian causal inference with PyMC, CausalPy, and DoWhy. Enforces DAG-first thinking, mandatory user checkpoints for assumptions, de SkillInstall · skills CLI | 5,013 | — | ||
| Checking ChEMBL for Structured SAR Data Check if medicinal chemistry papers are in ChEMBL database to access curated bioactivity data SkillInstall · skills CLI | 5,013 | — | ||
| cite Finds a paper by title, author, or DOI, adds BibTeX to references.bib, and shows citation syntax. Use when adding a reference. SkillInstall · skills CLI | 5,013 | — | ||
| Cleaning Up Research Sessions Safely remove intermediate files from completed research sessions while preserving important data SkillInstall · skills CLI | 5,013 | — | ||
| cross-disciplinary-ideation Field connection mapping and systematic ideation for method transfer SkillInstall · skills CLI | 5,013 | — | ||
| d2 Agent D2 - Data Collection Specialist - Interviews, Focus Groups & Observation. Covers protocol development, question design, probing strategies, tran SkillInstall · skills CLI | 5,013 | — | ||
| d4 Agent D4 - Measurement Instrument Developer - Scale construction and psychometric validation. Covers item development, validity evidence, and reliabil SkillInstall · skills CLI | 5,013 | — | ||
| deep-research Universal deep research agent team. 13-agent pipeline for rigorous academic research on any topic. 7 modes: full research, quick brief, paper review, SkillInstall · skills CLI | 5,013 | — | ||
| devils-advocate Challenge research design decisions, assumptions, and methodology choices with specific critical questions. Helps strengthen the paper before submissi SkillInstall · skills CLI | 5,013 | — | ||
| devils-advocate Challenge a slide deck design with 5-7 specific pedagogical questions. Checks ordering, prerequisites, gaps, alternatives, notation conflicts, cogniti SkillInstall · skills CLI | 5,013 | — | ||
| diverga Diverga Dashboard - Live configuration status and feature overview. 24 specialized agents across 9 categories for social science research. VS methodol SkillInstall · skills CLI | 5,013 | — | ||
| econ-abstract-writing Guide for writing the abstract of an academic economics paper. Use this skill whenever the user asks for help writing, drafting, revising, or structur SkillInstall · skills CLI | 5,013 | — | ||
| econ-intro-writing Guide for writing the introduction to an academic economics paper. Use this skill whenever the user asks for help writing, drafting, revising, or stru SkillInstall · skills CLI | 5,013 | — | ||
| Evaluating Paper Relevance Two-stage paper screening - abstract scoring then deep dive for specific data extraction SkillInstall · skills CLI | 5,013 | — | ||
| event-study Use this skill whenever the user wants to conduct an event study, create event study plots, test for parallel trends, implement difference-in-differen SkillInstall · skills CLI | 5,013 | — | ||
| Finding Open Access Papers Use Unpaywall API to find free full-text versions of paywalled papers SkillInstall · skills CLI | 5,013 | — | ||
| fletcher Defamiliarization audit for empirical output. Systematically interrogates every feature of a figure, table, or set of results — not just the main find SkillInstall · skills CLI | 5,013 | — | ||
| general-equilibrium-model-builder Build and solve Walrasian general equilibrium models with theory derivations and Julia computation SkillInstall · skills CLI | 5,013 | — | ||
| Getting Started with Research Superpowers Introduction to literature search & review skills - systematic paper finding, screening, extraction, and citation traversal SkillInstall · skills CLI | 5,013 | — | ||
| hypothesis-generation Structured hypothesis formulation from observations. Use when you have experimental observations or data and need to formulate testable hypotheses wit SkillInstall · skills CLI | 5,013 | — | ||
| hypothesis-generation Generate testable hypotheses. Formulate from observations, design experiments, explore competing explanations, develop predictions, propose mechanisms SkillInstall · skills CLI | 5,013 | — | ||
| identification-theory DAG and potential outcomes frameworks for causal mediation identification SkillInstall · skills CLI | 5,013 | — | ||
| interview-me Interactive interview to formalize a research idea into a structured specification with hypotheses and empirical strategy. SkillInstall · skills CLI | 5,013 | — | ||
| latex-document Universal LaTeX document skill: create, compile, and convert any document to professional PDF with PNG previews. Supports resumes, reports, cover lett SkillInstall · skills CLI | 5,013 | — | ||
| lit-review Structured literature search and synthesis with citation extraction and gap identification. SkillInstall · skills CLI | 5,013 | — | ||
| lit-review Structured literature review using a parallel fleet of Librarian agents. Searches top journals, working paper repositories (NBER, SSRN, IZA), and trac SkillInstall · skills CLI | 5,013 | — | ||
| lit-review-assistant Search, summarize, and synthesize economics literature SkillInstall · skills CLI | 5,013 | — | ||
| literature-gap-finder Method×Setting matrices and systematic gap identification SkillInstall · skills CLI | 5,013 | — | ||
| mathematical-foundations Core mathematical concepts and theoretical frameworks for statistics SkillInstall · skills CLI | 5,013 | — | ||
| mediation-meta-analyst Meta-analysis frameworks and methods for mediation studies SkillInstall · skills CLI | 5,013 | — | ||
| medical-imaging-review Write comprehensive literature reviews for medical imaging AI research. Use when writing survey papers, systematic reviews, or literature analyses on SkillInstall · skills CLI | 5,013 | — | ||
| method-transfer-engine Six-phase protocol for adapting methods across research domains SkillInstall · skills CLI | 5,013 | — | ||
| methods-communicator Effective communication strategies for statistical methods SkillInstall · skills CLI | 5,013 | — | ||
| methods-paper-writer JASA/Biometrika manuscript structure with VanderWeele notation standards SkillInstall · skills CLI | 5,013 | — | ||
| ml-paper-writing Write publication-ready ML/AI/Systems papers for NeurIPS, ICML, ICLR, ACL, AAAI, COLM, OSDI, NSDI, ASPLOS, SOSP. Use when drafting papers from researc SkillInstall · skills CLI | 5,013 | — | ||
| paper-slide-deck Generate professional slide deck images from academic papers and content. Creates comprehensive outlines with style instructions, auto-detects figures SkillInstall · skills CLI | 5,013 | — | ||
| paper-summary Writes expert academic paper summaries for social science research, particularly political science and applied statistics. Use when asked to summarize SkillInstall · skills CLI | 5,013 | — | ||
| peer-review Systematic peer review toolkit. Evaluate methodology, statistics, design, reproducibility, ethics, figure integrity, reporting standards, for manuscri SkillInstall · skills CLI | 5,013 | — | ||
| proof-architect Structured methodology for constructing and verifying mathematical proofs in statistical research SkillInstall · skills CLI | 5,013 | — | ||
| publication-strategist Strategic publication planning and venue selection for research SkillInstall · skills CLI | 5,013 | — | ||
| python-panel-data Panel data analysis with Python using linearmodels and pandas. SkillInstall · skills CLI | 5,013 | — | ||
| quality-gate Verify that every quantitative claim in the paper is traceable to an analysis output file, and that no important output was omitted. Make sure to use SkillInstall · skills CLI | 5,013 | — | ||
| r-econometrics Run IV, DiD, and RDD analyses in R with proper diagnostics SkillInstall · skills CLI | 5,013 | — | ||
| redistricting-analysis Redistricting analysis in R using the redistverse ecosystem. Use whenever the user is working with redist, redistmetrics, ggredist, geomander, adj, al SkillInstall · skills CLI | 5,013 | — | ||
| replicate-paper Run a full 6-phase autonomous replication of a biomedical/epidemiology paper against UK Biobank or similar cohort data, producing Python and R scripts SkillInstall · skills CLI | 5,013 | — | ||
| research-director Strategic research leadership for designing high-impact research agendas, coordinating teams, and translating research into policy and institutional i SkillInstall · skills CLI | 5,013 | — | ||
| research-grants Write competitive research proposals for NSF, NIH, DOE, DARPA, and Taiwan NSTC. Agency-specific formatting, review criteria, budget preparation, broad SkillInstall · skills CLI | 5,013 | — | ||
| research-grants Write competitive research proposals for NSF, NIH, DOE, and DARPA. Agency-specific formatting, review criteria, budget preparation, broader impacts, s SkillInstall · skills CLI | 5,013 | — | ||
| research-ideation Generate research questions from economic phenomena SkillInstall · skills CLI | 5,013 | — | ||
| research-ideation Generate structured research questions, testable hypotheses, and empirical strategies from a topic or dataset SkillInstall · skills CLI | 5,013 | — | ||
| research-ideation Generate structured research questions, testable hypotheses, and empirical strategies from a topic or dataset. SkillInstall · skills CLI | 5,013 | — | ||
| research-proposal Generate academic research proposals for PhD applications. Use when user asks to "write a research proposal", "create PhD proposal", "generate researc SkillInstall · skills CLI | 5,013 | — | ||
| review-grant Run a 6-agent pre-submission panel review for a grant proposal targeting a specified funder or program SkillInstall · skills CLI | 5,013 | — | ||
| review-pap Run a 6-agent pre-submission review of a pre-analysis plan (PAP) for a specified registration target or journal SkillInstall · skills CLI | 5,013 | — | ||
| review-paper Comprehensive manuscript review covering argument structure, econometric specification, citation completeness, and potential referee objections SkillInstall · skills CLI | 5,013 | — | ||
| review-paper Comprehensive manuscript review covering argument structure, identification strategy, econometric specification, citation completeness, and potential SkillInstall · skills CLI | 5,013 | — | ||
| review-paper Comprehensive manuscript review covering argument structure, econometric specification, citation completeness, and potential referee objections. Make SkillInstall · skills CLI | 5,013 | — | ||
| review-paper Run a 6-agent pre-submission referee report for an academic paper targeting a specified journal SkillInstall · skills CLI | 5,013 | — | ||
| review-paper-light Run a fast 2-agent pre-submission check for an economics paper — focuses on contribution, identification, and causal overclaiming. Completes in ~1 min SkillInstall · skills CLI | 5,013 | — | ||
| scholar-evaluation Apply the ScholarEval framework to systematically evaluate scholarly work across quality dimensions (novelty, rigor, significance, and clarity). Use t SkillInstall · skills CLI | 5,013 | — | ||
| scientific-critical-thinking Evaluate research rigor. Assess methodology, experimental design, statistical validity, biases, confounding, evidence quality (GRADE, Cochrane ROB), f SkillInstall · skills CLI | 5,013 | — | ||
| scientific-writing Core skill for the deep research and writing tool. Write scientific manuscripts in full paragraphs (never bullet points). Use two-stage process with ( SkillInstall · skills CLI | 5,013 | — | ||
| scientific-writing Core skill for the deep research and writing tool. Write scientific manuscripts in full paragraphs (never bullet points). Use two-stage process: (1) c SkillInstall · skills CLI | 5,013 | — | ||
| Searching Scientific Literature PubMed search with keyword optimization, result parsing, and metadata extraction SkillInstall · skills CLI | 5,013 | — | ||
| sensitivity-analyst Sensitivity analysis frameworks and assumption-testing methods SkillInstall · skills CLI | 5,013 | — | ||
| stat-writing End-to-end statistical writing assistant for LaTeX - draft title/abstract/keywords, expand outlines into sections, audit manuscripts, write reviewer r SkillInstall · skills CLI | 5,013 | — | ||
| stata Comprehensive Stata reference for writing correct .do files, data management, econometrics, causal inference, graphics, Mata programming, and 17+ comm SkillInstall · skills CLI | 5,013 | — | ||
| stata-accounting-research STATA code pattern library for empirical archival accounting research. Provides tested syntax from 126 peer-reviewed JAR (Journal of Accounting Resear SkillInstall · skills CLI | 5,013 | — | ||
| Subagent-Driven Literature Review Use parallel subagents for large-scale paper screening and deep dive analysis SkillInstall · skills CLI | 5,013 | — | ||
| Traversing Citation Networks Smart backward and forward citation following via Semantic Scholar, with relevance filtering and deduplication SkillInstall · skills CLI | 5,013 | — | ||
| validate-bib Validate bibliography entries against citations in all manuscript files. Find missing entries and unused references. SkillInstall · skills CLI | 5,013 | — | ||
| validate-bib Validate bibliography entries against citations in all source files. Find missing entries and unused references. Make sure to use this skill whenever SkillInstall · skills CLI | 5,013 | — | ||
| academic-paper-reviewer Simulates academic peer review, evaluating papers across Originality, Methodology, Results, and Writing to provide Major/Minor Revision recommendation SkillInstall · skills CLI | 4,708 | MIT | ||
| skill-algorithm-updates 追踪抖音、小红书、B站、微博、知乎、视频号和今日头条的算法、推荐分发、审核与变现规则变化，并分析对创作者的影响。 当用户说“算法/推荐机制变了吗、流量规则更新、为什么流量下降、平台规则变化”时使用。 内容热点用 skill-trending-topics；泛行业资讯用 skill-news-inte SkillInstall · skills CLI | 4,670 | Apache-2.0 | ||
| nihaixia 倪海厦（1954-2012）台湾中医师，经方派代表人物，汉唐中医创始人。核心心智模型：六经辨证、阳气论、经典至上、经方为主。决策启发式：先辨六经再选方、阳气不足先扶阳、经典原方最可靠。触发词：倪海厦、海厦视角、中医倪海厦、经方思维、倪海厦会怎么看、倪师。知识库覆盖：伤寒论条文补齐（太阳下篇+阳明篇， SkillInstall · skills CLI | 4,098 | — | ||
| book-study Reading coach: guides users through books systematically with knowledge compilation, mastery testing, spaced repetition, and knowledge querying. Use w SkillInstall · skills CLI | 3,982 | MIT | ||
| sigma Personalized 1-on-1 AI tutor using Bloom's 2-Sigma mastery learning. Guides users through any topic with Socratic questioning, adaptive pacing, and ri SkillInstall · skills CLI | 3,982 | MIT | ||
| cdf-anomalygen Use when running the CDF AnomalyGen pipeline over a defect dataset — mask placement, fine-tuning, synthetic defect-image generation (SDG), evaluation, SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| cdf-augmentation Use when authoring or validating Cosmos Data Factory (CDF) augmentation YAML configs, or running remote Cosmos Transfer (including Cosmos3 WSM control SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| cdf-auto-labeling Use when a user needs to get started with CDF Auto-Labeling, plan a scenario, run or debug a shipped cookbook, author prompts or cookbooks, migrate a SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| cdf-autonomous-vehicle-dataset-generation Prepare payloads, run and monitor the Autonomous Vehicle Dataset Generation Airflow workflow, and inspect results for driving-clip retrieval and Cosmo SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| cdf-curation-and-retrieval NVIDIA CDF curation and retrieval. Cosmos Curator video and image pipelines (split, dedup, shard, annotate) with filtering, captioning, and embedding. SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| cdf-defect-image-generation Generate synthetic PCB inspection images on Kubernetes with the SMT Defect Image Generation (DIG) DAG in CDF Orchestration. The DAG renders components SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| cdf-event-video-generation Run the CDF Orchestration Event Video Generation DAG on Kubernetes or OSMO - image-to-video anomaly generation, auto-labeling, and anomaly dataset gen SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| dicom-metadata-extract Used for extracting selected metadata from one DICOM file and flagging standard-tag PHI presence. Not for anonymization or clinical use. SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| dicom-series-preflight Used for header-only preflight of one DICOM series folder before conversion or inference. Not for de-identification or clinical clearance. SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| dicom-series-to-volume Used for converting one CT DICOM series folder to a HU NIfTI volume with affine evidence. Not for multi-frame DICOM or clinical use. SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| kermt-add-cmim-pretrain Convert a grover_base checkpoint (encoder-only or encoder + vocab heads) into a hybrid checkpoint by adding a randomly-initialized cMIM decoder + late SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| kermt-continue-pretrain Continue KERMT pretraining on a custom SMILES corpus with a grover_base, cmim, or hybrid checkpoint. Use a local checkpoint or optionally download a p SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| kermt-embed Extract per-molecule embeddings from any encoder-bearing KERMT checkpoint. Use a local checkpoint or optionally download a pinned Hugging Face model b SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| kermt-finetune Finetune a pretrained KERMT encoder on a labeled CSV. Validate the checkpoint and data, prepare features, and run containerized training. Use a local SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| kermt-infer Run predictions with a finetuned KERMT checkpoint on a SMILES-only CSV. The skill validates that the input ckpt has task FFN heads (refuses pretrain c SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| kermt-monitor Check progress for a detached KERMT run (pretrain, finetune, or any kermt_run_detached invocation). Reads run.json, queries docker for container state SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| kermt-pretrain-scratch Pretrain a fresh KERMT model from scratch on a user-provided corpus. Builds a new vocabulary from the corpus, instantiates the model architecture from SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| kermt-setup Bootstrap the KERMT agent environment — verify host docker + nvidia-container-toolkit, build the kermt:latest image from the repo's Dockerfile if it d SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| molmim-nim Use this skill for MolMIM, NVIDIA's BioNeMo NIM microservice for small-molecule latent-space generation and optimization. Invoke for MolMIM, molecular SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| msa-search-nim Generate multiple sequence alignments (MSAs) for protein sequences using the ColabFold MSA-Search NIM. Use for homolog search, UniRef30/ColabFold env SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| msa-structure-prediction-pipeline NOTE: your protein sequence and the retrieved MSA alignment are transmitted to external NVIDIA-hosted APIs (health.api.nvidia.com) on every call. Use SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| nvmolkit-usage Use when writing or debugging nvMolKit Python code for GPU-accelerated RDKit fingerprints, similarity, conformers, clustering, and molecular searches. SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| openfold2-nim Use this skill for OpenFold2, NVIDIA's BioNeMo NIM microservice for monomer protein structure prediction. Invoke whenever the user mentions OpenFold2, SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| openfold3-nim Use this skill for OpenFold3, NVIDIA's BioNeMo NIM microservice for biomolecular structure prediction. Invoke whenever the user mentions OpenFold3 or SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| parabricks Plan NVIDIA Parabricks pbrun commands, translate CPU options and check runtime readiness. Use for individual tools, including planning-only questions. SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| proteinmpnn-nim Run ProteinMPNN inverse folding via NVIDIA NIM to design protein sequences for a target backbone. Sends user-provided PDB files and design parameters SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| rfd4-proteina-nim Run RFD4-Proteina NIM for joint protein structure and sequence design, conditioned generation, and reward-guided search using the NVIDIA hosted API or SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| rfdiffusion-nim Run RFDiffusion protein backbone design via NVIDIA NIM. Use for de novo protein backbones, motif scaffolding, binder design, hotspot residues, contigs SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| adaptyv Cloud laboratory platform for automated protein testing and validation. Use when designing proteins and needing experimental validation including bind SkillInstall · skills CLI | 3,816 | Apache-2.0 | ||
| clinical-decision-support Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses ( SkillInstall · skills CLI | 3,816 | Apache-2.0 | ||
| clinical-reports Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (I SkillInstall · skills CLI | 3,816 | Apache-2.0 | ||
| edgartools Python library for accessing, analyzing, and extracting data from SEC EDGAR filings. Use when working with SEC filings, financial statements (income s SkillInstall · skills CLI | 3,816 | Apache-2.0 | ||
| etetoolkit Phylogenetic tree toolkit (ETE). Tree manipulation (Newick/NHX), evolutionary event detection, orthology/paralogy, NCBI taxonomy, visualization (PDF/S SkillInstall · skills CLI | 3,816 | Apache-2.0 | ||
| fda-database Query openFDA API for drugs, devices, adverse events, recalls, regulatory submissions (510k, PMA), substance identification (UNII), for FDA regulatory SkillInstall · skills CLI | 3,816 | Apache-2.0 | ||
| fluidsim Framework for computational fluid dynamics simulations using Python. Use when running fluid dynamics simulations including Navier-Stokes equations (2D SkillInstall · skills CLI | 3,816 | Apache-2.0 | ||
| geo-database Access NCBI GEO for gene expression/genomics data. Search/download microarray and RNA-seq datasets (GSE, GSM, GPL), retrieve SOFT/Matrix files, for tr SkillInstall · skills CLI | 3,816 | Apache-2.0 | ||
| geomaster Comprehensive geospatial science skill covering remote sensing, GIS, spatial analysis, machine learning for earth observation, and 30+ scientific doma SkillInstall · skills CLI | 3,816 | Apache-2.0 | ||
| gtars High-performance toolkit for genomic interval analysis in Rust with Python bindings. Use when working with genomic regions, BED files, coverage tracks SkillInstall · skills CLI | 3,816 | Apache-2.0 | ||
| histolab Lightweight WSI tile extraction and preprocessing. Use for basic slide processing tissue detection, tile extraction, stain normalization for H&E image SkillInstall · skills CLI | 3,816 | Apache-2.0 | ||
| neuropixels-analysis Neuropixels neural recording analysis. Load SpikeGLX/OpenEphys data, preprocess, motion correction, Kilosort4 spike sorting, quality metrics, Allen/IB SkillInstall · skills CLI | 3,816 | Apache-2.0 | ||
| openalex-database Query and analyze scholarly literature using the OpenAlex database. This skill should be used when searching for academic papers, analyzing research t SkillInstall · skills CLI | 3,816 | Apache-2.0 | ||
| paper-2-web Use when converting academic papers into dissemination assets such as Paper2Web websites, Paper2Video video abstracts, or Paper2Poster conference post SkillInstall · skills CLI | 3,816 | Apache-2.0 | ||
| pubmed-database Direct REST API access to PubMed. Advanced Boolean/MeSH queries, E-utilities API, batch processing, citation management. For Python workflows, prefer SkillInstall · skills CLI | 3,816 | Apache-2.0 | ||
| pyhealth Comprehensive healthcare AI toolkit for developing, testing, and deploying machine learning models with clinical data. This skill should be used when SkillInstall · skills CLI | 3,816 | Apache-2.0 | ||
| pymc-bayesian-modeling Compatibility alias for the descriptive PyMC skill name. Delegate to the canonical local `pymc` payload while preserving route and README compatibilit SkillInstall · skills CLI | 3,816 | Apache-2.0 | ||
| pyopenms Python interface to OpenMS for mass spectrometry data analysis. Use for LC-MS/MS proteomics and metabolomics workflows including file handling (mzML, SkillInstall · skills CLI | 3,816 | Apache-2.0 | ||
| rdkit Core cheminformatics toolkit for SMILES/SDF/InChI parsing, descriptors (MW, LogP, TPSA), fingerprints, ECFP/Morgan fingerprints, substructure search, SkillInstall · skills CLI | 3,816 | Apache-2.0 | ||
| rowan Cloud-based quantum chemistry platform with Python API. Preferred for computational chemistry workflows including pKa prediction, geometry optimizatio SkillInstall · skills CLI | 3,816 | Apache-2.0 | ||
| scanpy Single-cell RNA-seq and retained scverse workflow owner. Load .h5ad/10X data, manage AnnData metadata, plan scVI/scANVI batch-correction workflows, QC SkillInstall · skills CLI | 3,816 | Apache-2.0 | ||
| scholar-evaluation Systematically evaluate scholarly work using the ScholarEval framework, providing structured assessment across research quality dimensions including p SkillInstall · skills CLI | 3,816 | Apache-2.0 | ||
| scholarly-publishing Use when planning an end-to-end scholarly publishing workflow, including manuscript source-of-truth, submission assets, revision/rebuttal files, camer SkillInstall · skills CLI | 3,816 | Apache-2.0 | ||
| scientific-brainstorming Open-ended scientific ideation partner. Use for research gaps, mechanism exploration, interdisciplinary connections, assumptions, possible research di SkillInstall · skills CLI | 3,816 | Apache-2.0 | ||
| scientific-critical-thinking Evaluate scientific claims and evidence quality. Use for assessing experimental design validity, identifying biases and confounders, applying evidence SkillInstall · skills CLI | 3,816 | Apache-2.0 | ||
| statistical-analysis Statistical analysis toolkit. Hypothesis tests (t-test, ANOVA, chi-square), regression, correlation, Bayesian stats, power analysis, assumption checks SkillInstall · skills CLI | 3,816 | Apache-2.0 | ||
| statistics-math Statistics, probability, linear algebra, and mathematical foundations for data science SkillInstall · skills CLI | 3,816 | Apache-2.0 | ||
| statsmodels Statistical modeling toolkit. OLS, GLM, logistic, ARIMA, time series, hypothesis tests, diagnostics, AIC/BIC, for rigorous statistical inference and e SkillInstall · skills CLI | 3,816 | Apache-2.0 | ||
| submission-checklist Stage-based submission checklists for papers/reports: pre-submission, submission, revision/rebuttal, camera-ready. Includes templates (cover letter, r SkillInstall · skills CLI | 3,816 | Apache-2.0 | ||
| tiledbvcf Efficient storage and retrieval of genomic variant data using TileDB. Scalable VCF/BCF ingestion, incremental sample addition, compressed storage, par SkillInstall · skills CLI | 3,816 | Apache-2.0 | ||
| torchdrug Graph-based drug discovery toolkit. Molecular property prediction (ADMET), protein modeling, knowledge graph reasoning, molecular generation, retrosyn SkillInstall · skills CLI | 3,816 | Apache-2.0 | ||
| treatment-plans Generate concise (3-4 page), focused medical treatment plans in LaTeX/PDF format for all clinical specialties. Supports general medical treatment, reh SkillInstall · skills CLI | 3,816 | Apache-2.0 | ||
| uniprot-database Direct REST API access to UniProt. Protein searches, FASTA retrieval, ID mapping, Swiss-Prot/TrEMBL. For broader biological evidence lookup across dat SkillInstall · skills CLI | 3,816 | Apache-2.0 | ||
| usfiscaldata Query the U.S. Treasury Fiscal Data API for federal financial data including national debt, government spending, revenue, interest rates, exchange rat SkillInstall · skills CLI | 3,816 | Apache-2.0 | ||
| venue-templates Use when preparing manuscripts, conference papers, or academic posters that need venue-specific templates, LaTeX style files, author guidelines, page SkillInstall · skills CLI | 3,816 | Apache-2.0 | ||
| event-research-follow-up Research business events, organize photo leads and attendee rosters, qualify companies with evidence, and prepare or execute explicitly approved event SkillInstall · skills CLI | 3,814 | MIT | ||
| company-research Company discovery and deep research skill. Researches a company's product and ICP, discovers target companies to sell to using Browserbase Search API, SkillInstall · skills CLI | 3,757 | — | ||
| competitor-analysis Competitor research and intelligence skill. Takes a user's company (with optional seed competitor URLs), auto-discovers additional competitors via Bro SkillInstall · skills CLI | 3,757 | — | ||
| event-prospecting Event prospecting skill. Takes a conference / event speakers URL, extracts the people, filters their companies against the user's ICP, then deep-resea SkillInstall · skills CLI | 3,757 | — | ||
| competitor-research Research competitor products, launch history, and acquisition evidence from public sources or supplied materials. Use when evaluating growth claims, c SkillInstall · skills CLI | 3,743 | MIT | ||
| dating-profile-coach Review and improve a dating profile on Tinder, Hinge or Bumble — rank the user''s photos and pick the lead photo, check them against the app''s offici SkillInstall · skills CLI | 3,743 | MIT | ||
| dsh-deepread 精读一本书或一篇文章：提取核心观点、论证结构与关键论据。当用户要求「精读/分析这篇文章」「提取核心观点」「梳理论证逻辑」「做知识地图」「用费曼读书法读书」时使用本技能。五种模式：quick 快速要点 / deep 深度精读 / map 知识地图 / feynman 费曼读书法 / book 全书精读 SkillInstall · skills CLI | 3,743 | MIT | ||
| morning-ai AI news tracking skill that monitors 80+ entities across 6 free sources (Reddit, HN, GitHub, HuggingFace, arXiv, X/Twitter). Generates scored daily re SkillInstall · skills CLI | 3,743 | MIT | ||
| toolkit-research Use when the user explicitly requests research with Baizhi Agent Toolkit. Discover the connected MCP tools and their current schemas, agree a request SkillInstall · skills CLI | 3,743 | MIT | ||
| pacman Retro arcade-inspired design with pixel fonts, dotted borders, playful high-contrast colors, and 8-bit game aesthetics. SkillInstall · skills CLI | 3,654 | MIT | ||
| amap Places, routes, travel times, distances and weather in China through the 高德地图 (Amap) MCP server. Use when the user asks how far, how long, how to get SkillInstall · skills CLI | 3,474 | GPL-3.0 | ||
| kuaidi100 Where a parcel is, when it will arrive and what a shipment would cost, through the 快递100 MCP server: any Chinese courier (顺丰, 京东, 中通, 圆通, 韵达, 邮政 and m SkillInstall · skills CLI | 3,474 | GPL-3.0 | ||
| train-tickets Trains in China through the 12306 MCP server: routes, dates, options, connections and stops with no screen; booking only on the user's word, in the 12 SkillInstall · skills CLI | 3,474 | GPL-3.0 | ||
| trip-plan Plan a trip end to end (itinerary by day, a packing list to tick off, a budget, and the calendar checked for conflicts) as pages in the workspace. Use SkillInstall · skills CLI | 3,474 | GPL-3.0 | ||
| predictingthepast Ancient text restoration, attribution, dating, contextualization, and embedding via Aeneas (Latin) / Ithaca (Ancient Greek). Use when asked to "restor SkillInstall · skills CLI | 3,472 | Apache-2.0 | ||
| affinity-diagram Cluster many qualitative data points into themes and insight statements. Use when synthesising across multiple sessions or sources. For a single trans SkillInstall · skills CLI | 3,351 | MIT | ||
| card-sort-analysis Analyse open or closed card sort results into a proposed grouping and label set. Use after running a sort study. For turning that evidence into a full SkillInstall · skills CLI | 3,351 | MIT | ||
| diary-study-plan Design a diary study — prompts, cadence, duration, participant criteria, and analysis frame. Use when behaviour unfolds over days or weeks. For a sing SkillInstall · skills CLI | 3,351 | MIT | ||
| empathy-map Build a Says, Thinks, Does, Feels map for one user or segment. Use when sharing user understanding quickly. For a composite archetype with goals and b SkillInstall · skills CLI | 3,351 | MIT | ||
| interview-script Write a structured interview guide — warm-up, core exploration, and wrap-up. Use before running interviews. For analysing what comes back, use `summar SkillInstall · skills CLI | 3,351 | MIT | ||
| jobs-to-be-done Map functional, emotional, and social jobs with outcome expectations. Use when reframing decisions around motivation rather than features. For who the SkillInstall · skills CLI | 3,351 | MIT | ||
| journey-map Map one persona's end-to-end experience with stages, touchpoints, emotions, and pain points. Use when improving an existing experience. For the multi- SkillInstall · skills CLI | 3,351 | MIT | ||
| qual-quant-triangulation Reconcile what the numbers say with what users say, and design the study that settles it rather than restates it. Use when behavioural data and resear SkillInstall · skills CLI | 3,351 | MIT | ||
| summarize-interview Turn one interview transcript into themes, supporting quotes, and action items. Use immediately after a session. For synthesising many sessions at onc SkillInstall · skills CLI | 3,351 | MIT | ||
| survey-design Design unbiased survey instruments — question wording, scales, and sampling — to measure attitudes at scale. Use when you need quantitative breadth. F SkillInstall · skills CLI | 3,351 | MIT | ||
| usability-test-plan Design a usability study — research questions, methodology, participant criteria, metrics, and facilitation guide. Use when planning the study as a wh SkillInstall · skills CLI | 3,351 | MIT | ||
| user-persona Build research-grounded personas with goals, frustrations, and behavioural patterns. Use when decisions need a consistent user reference. For one sess SkillInstall · skills CLI | 3,351 | MIT | ||
| deep-research 深度调研方法论（8步法）：将模糊主题转化为高质量调研报告。 触发词：/deep-research、深度调研、帮我调研、调研一下、对比分析 注意：如果用户需要的是可视化图谱而非报告，请使用 research-to-diagram skill。 SkillInstall · skills CLI | 3,296 | MIT | ||
| research-to-diagram 深度调研主题并自动生成知识关系图谱PDF。接收研究主题后自动进行网络调研、信息收集、知识整理，最终生成专业的可视化关系图谱。适用于"研究...并做图"、"深度分析...并可视化"、"生成知识图谱"等场景。 SkillInstall · skills CLI | 3,296 | MIT | ||
| io.github.blazickjp/arxiv-mcp-server Search arXiv papers, download full text, semantic search, citation graphs, and alerts via MCP. MCP serverGitHub-verified authorLocal · PyPI | 3,276 | Apache-2.0 | ||
| azure-maps-search-dotnet Azure Maps SDK for .NET. Location-based services including geocoding, routing, rendering, geolocation, and weather. Use for address search, directions SkillInstall · skills CLI | 3,203 | MIT | ||
| ai-analyzer AI驱动的综合健康分析系统，整合多维度健康数据、识别异常模式、预测健康风险、提供个性化建议。支持智能问答和AI健康报告生成。 SkillInstall · skills CLI | 3,107 | — | ||
| binder-design Guidance for choosing the right protein binder design tool. Use this skill when: (1) Deciding between BoltzGen, BindCraft, or RFdiffusion, (2) Plannin SkillInstall · skills CLI | 3,107 | — | ||
| binding-characterization Guidance for SPR and BLI binding characterization experiments. Use when: (1) Planning binding kinetics experiments, (2) Troubleshooting poor/no bindin SkillInstall · skills CLI | 3,107 | — | ||
| bio-atac-seq-motif-deviation Analyze transcription factor motif accessibility variability using chromVAR. Use when identifying which TF motifs show variable accessibility across s SkillInstall · skills CLI | 3,107 | — | ||
| bio-atac-seq-nucleosome-positioning Extract nucleosome positions from ATAC-seq data using NucleoATAC, ATACseqQC, and fragment analysis. Use when analyzing chromatin organization, identif SkillInstall · skills CLI | 3,107 | — | ||
| bio-basecalling Convert raw Nanopore signal data (FAST5/POD5) to nucleotide sequences using Dorado basecaller. Covers model selection, GPU acceleration, modified base SkillInstall · skills CLI | 3,107 | — | ||
| bio-batch-processing Process multiple sequence files in batch using Biopython. Use when working with many files, merging/splitting sequences, or automating file operations SkillInstall · skills CLI | 3,107 | — | ||
| bio-causal-genomics-colocalization-analysis Test whether two traits share a causal variant at a genomic locus using Bayesian colocalization with coloc. Computes posterior probabilities for share SkillInstall · skills CLI | 3,107 | — | ||
| bio-causal-genomics-fine-mapping Identify likely causal variants within GWAS loci using SuSiE for sum of single effects regression and FINEMAP for shotgun stochastic search. Computes SkillInstall · skills CLI | 3,107 | — | ||
| bio-causal-genomics-mediation-analysis Decompose genetic effects into direct and indirect paths through mediating variables using the mediation R package. Tests whether gene expression, met SkillInstall · skills CLI | 3,107 | — | ||
| bio-causal-genomics-mendelian-randomization Estimate causal effects between exposures and outcomes using genetic variants as instrumental variables with TwoSampleMR. Implements IVW, MR-Egger, we SkillInstall · skills CLI | 3,107 | — | ||
| bio-causal-genomics-pleiotropy-detection Detect and correct for horizontal pleiotropy in Mendelian randomization analyses using MR-PRESSO for outlier removal, MR-Egger regression for directio SkillInstall · skills CLI | 3,107 | — | ||
| bio-cfdna-preprocessing Preprocesses cell-free DNA sequencing data including adapter trimming, alignment optimized for short fragments, and UMI-aware duplicate removal using SkillInstall · skills CLI | 3,107 | — | ||
| bio-chipseq-differential-binding Differential binding analysis using DiffBind. Compare ChIP-seq peaks between conditions with statistical rigor. Requires replicate samples. Outputs di SkillInstall · skills CLI | 3,107 | — | ||
| bio-chipseq-motif-analysis De novo motif discovery and known motif enrichment analysis using HOMER and MEME-ChIP. Identify transcription factor binding motifs in ChIP-seq, ATAC- SkillInstall · skills CLI | 3,107 | — | ||
| bio-chipseq-peak-annotation Annotate ChIP-seq peaks to genomic features and genes using ChIPseeker. Assign peaks to promoters, exons, introns, and intergenic regions. Find neares SkillInstall · skills CLI | 3,107 | — | ||
| bio-chipseq-peak-calling ChIP-seq peak calling using MACS3 (or MACS2). Call narrow peaks for transcription factors or broad peaks for histone modifications. Supports input con SkillInstall · skills CLI | 3,107 | — | ||
| bio-chipseq-qc ChIP-seq quality control metrics including FRiP (Fraction of Reads in Peaks), cross-correlation analysis (NSC/RSC), library complexity, and IDR (Irrep SkillInstall · skills CLI | 3,107 | — | ||
| bio-chipseq-super-enhancers Identifies super-enhancers from H3K27ac ChIP-seq data using ROSE and related tools. Use when studying cell identity genes, cancer-associated regulator SkillInstall · skills CLI | 3,107 | — | ||
| bio-chipseq-visualization Visualize ChIP-seq data using deepTools, Gviz, and ChIPseeker. Create heatmaps, profile plots, and genome browser tracks. Visualize signal around peak SkillInstall · skills CLI | 3,107 | — | ||
| bio-clinical-databases-clinvar-lookup Query ClinVar for variant pathogenicity classifications, review status, and disease associations via REST API or local VCF. Use when determining clini SkillInstall · skills CLI | 3,107 | — | ||
| bio-clinical-databases-dbsnp-queries Query dbSNP for rsID lookups, variant annotations, and cross-references to other databases. Use when mapping between rsIDs and genomic coordinates or SkillInstall · skills CLI | 3,107 | — | ||
| bio-clinical-databases-gnomad-frequencies Query gnomAD for population allele frequencies to assess variant rarity. Use when filtering variants by population frequency for rare disease analysis SkillInstall · skills CLI | 3,107 | — | ||
| bio-clinical-databases-hla-typing Call HLA alleles from NGS data using OptiType, HLA-HD, or arcasHLA for immunogenomics applications. Use when determining HLA genotype for transplant m SkillInstall · skills CLI | 3,107 | — | ||
| bio-clinical-databases-myvariant-queries Query myvariant.info API for aggregated variant annotations from multiple databases (ClinVar, gnomAD, dbSNP, COSMIC, etc.) in a single request. Use wh SkillInstall · skills CLI | 3,107 | — | ||
| bio-clinical-databases-pharmacogenomics Query PharmGKB and CPIC for drug-gene interactions, pharmacogenomic annotations, and dosing guidelines. Use when predicting drug response from genetic SkillInstall · skills CLI | 3,107 | — | ||
| bio-clinical-databases-polygenic-risk Calculate polygenic risk scores using PRSice-2, LDpred2, or PRS-CS from GWAS summary statistics. Use when predicting disease risk from genome-wide gen SkillInstall · skills CLI | 3,107 | — | ||
| bio-clinical-databases-somatic-signatures Extract and analyze mutational signatures from somatic variants using SigProfiler or MutationalPatterns to characterize mutagenic processes. Use when SkillInstall · skills CLI | 3,107 | — | ||
| bio-clinical-databases-tumor-mutational-burden Calculate tumor mutational burden from panel or WES data with proper normalization and clinical thresholds. Use when assessing immunotherapy eligibili SkillInstall · skills CLI | 3,107 | — | ||
| bio-clinical-databases-variant-prioritization Filter and prioritize variants by pathogenicity, population frequency, and clinical evidence for rare disease analysis. Use when identifying candidate SkillInstall · skills CLI | 3,107 | — | ||
| bio-copy-number-cnv-annotation Annotate CNVs with genes, pathways, and clinical significance. Use when interpreting CNV calls or identifying affected genes from copy number analysis SkillInstall · skills CLI | 3,107 | — | ||
| bio-copy-number-cnvkit-analysis Detect copy number variants from targeted/exome sequencing using CNVkit. Supports tumor-normal pairs, tumor-only, and germline CNV calling. Use when d SkillInstall · skills CLI | 3,107 | — | ||
| bio-copy-number-gatk-cnv Call copy number variants using GATK best practices workflow. Supports both somatic (tumor-normal) and germline CNV detection from WGS or WES data. Us SkillInstall · skills CLI | 3,107 | — | ||
| bio-crispr-screens-base-editing-analysis Analyzes base editing and prime editing outcomes including editing efficiency, bystander edits, and indel frequencies. Use when quantifying CRISPR bas SkillInstall · skills CLI | 3,107 | — | ||
| bio-crispr-screens-batch-correction Batch effect correction for CRISPR screens. Covers normalization across batches, technical replicate handling, and batch-aware analysis. Use when comb SkillInstall · skills CLI | 3,107 | — | ||
| bio-crispr-screens-crispresso-editing CRISPResso2 for analyzing CRISPR gene editing outcomes. Quantifies indels, HDR efficiency, and generates comprehensive editing reports. Use when analy SkillInstall · skills CLI | 3,107 | — | ||
| bio-crispr-screens-hit-calling Statistical methods for calling hits in CRISPR screens. Covers MAGeCK, BAGEL2, drugZ, and custom approaches for identifying essential and resistance g SkillInstall · skills CLI | 3,107 | — | ||
| bio-crispr-screens-jacks-analysis JACKS (Joint Analysis of CRISPR/Cas9 Knockout Screens) for modeling sgRNA efficacy and gene essentiality. Use when analyzing multiple CRISPR screens s SkillInstall · skills CLI | 3,107 | — | ||
| bio-crispr-screens-library-design CRISPR library design for genetic screens. Covers sgRNA selection, library composition, control design, and oligo ordering. Use when designing custom SkillInstall · skills CLI | 3,107 | — | ||
| bio-crispr-screens-mageck-analysis MAGeCK (Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout) for pooled CRISPR screen analysis. Covers count normalization, gene ranking, and pat SkillInstall · skills CLI | 3,107 | — | ||
| bio-crispr-screens-screen-qc Quality control for pooled CRISPR screens. Covers library representation, read distribution, replicate correlation, and essential gene recovery. Use w SkillInstall · skills CLI | 3,107 | — | ||
| bio-ctdna-mutation-detection Detects somatic mutations in circulating tumor DNA using variant callers optimized for low allele fractions with UMI-based error suppression. Reliably SkillInstall · skills CLI | 3,107 | — | ||
| bio-epidemiological-genomics-amr-surveillance Detect and track antimicrobial resistance genes using AMRFinderPlus and ResFinder with epidemiological context. Monitor resistance trends and identify SkillInstall · skills CLI | 3,107 | — | ||
| bio-epidemiological-genomics-pathogen-typing Perform multi-locus sequence typing (MLST), core genome MLST, and SNP-based strain typing for bacterial isolate characterization using mlst and chewBB SkillInstall · skills CLI | 3,107 | — | ||
| bio-epidemiological-genomics-phylodynamics Construct time-scaled phylogenies and infer evolutionary dynamics using TreeTime and BEAST2 for outbreak analysis. Estimate divergence times, molecula SkillInstall · skills CLI | 3,107 | — | ||
| bio-epidemiological-genomics-transmission-inference Infer pathogen transmission networks and identify likely transmission pairs using TransPhylo and outbreak reconstruction algorithms. Estimate who-infe SkillInstall · skills CLI | 3,107 | — | ||
| bio-epidemiological-genomics-variant-surveillance Assign pathogen lineages and track variants using Nextclade and pangolin for viral surveillance. Monitor variant prevalence and identify emerging vari SkillInstall · skills CLI | 3,107 | — | ||
| bio-fastq-quality Work with FASTQ quality scores using Biopython. Use when analyzing read quality, filtering by quality, trimming low-quality bases, or generating quali SkillInstall · skills CLI | 3,107 | — | ||
| bio-filter-sequences Filter and select sequences by criteria (length, ID, GC content, patterns) using Biopython. Use when subsetting sequences, removing unwanted records, SkillInstall · skills CLI | 3,107 | — | ||
| bio-flow-cytometry-bead-normalization Bead-based normalization for CyTOF and high-parameter flow cytometry. Covers EQ bead normalization, signal drift correction, and batch normalization. SkillInstall · skills CLI | 3,107 | — | ||
| bio-flow-cytometry-clustering-phenotyping Unsupervised clustering and cell type identification for flow/mass cytometry. Covers FlowSOM, Phenograph, and CATALYST workflows. Use when discovering SkillInstall · skills CLI | 3,107 | — | ||
| bio-flow-cytometry-compensation-transformation Spillover compensation and data transformation for flow cytometry. Covers compensation matrix calculation, application, and biexponential/arcsinh tran SkillInstall · skills CLI | 3,107 | — | ||
| bio-flow-cytometry-cytometry-qc Comprehensive quality control for flow cytometry and CyTOF data. Covers flow rate stability, signal drift, margin events, dead cell exclusion, and bat SkillInstall · skills CLI | 3,107 | — | ||
| bio-flow-cytometry-differential-analysis Differential abundance and state analysis for cytometry data. Compare cell populations between conditions using statistical methods. Use when testing SkillInstall · skills CLI | 3,107 | — | ||
| bio-flow-cytometry-doublet-detection Detect and remove doublets from flow and mass cytometry data. Covers FSC/SSC gating and computational doublet detection methods. Use when filtering ou SkillInstall · skills CLI | 3,107 | — | ||
| bio-flow-cytometry-fcs-handling Read and manipulate Flow Cytometry Standard (FCS) files. Covers loading data, accessing parameters, and basic data exploration. Use when loading and i SkillInstall · skills CLI | 3,107 | — | ||
| bio-flow-cytometry-gating-analysis Manual and automated gating for defining cell populations in flow cytometry. Covers rectangular, polygon, and data-driven gates. Use when identifying SkillInstall · skills CLI | 3,107 | — | ||
| bio-format-conversion Convert between sequence file formats (FASTA, FASTQ, GenBank, EMBL) using Biopython Bio.SeqIO. Use when changing file formats or preparing data for di SkillInstall · skills CLI | 3,107 | — | ||
| bio-fragment-analysis Analyzes cfDNA fragment size distributions and fragmentomics features using FinaleToolkit or Griffin. Extracts nucleosome positioning patterns, fragme SkillInstall · skills CLI | 3,107 | — | ||
| bio-gatk-variant-calling Variant calling with GATK HaplotypeCaller following best practices. Covers germline SNP/indel calling, GVCF workflow for cohorts, joint genotyping, an SkillInstall · skills CLI | 3,107 | — | ||
| bio-genome-engineering-base-editing-design Design guides for cytosine and adenine base editing using editing window optimization and BE-Hive outcome prediction. Select optimal positions for C-t SkillInstall · skills CLI | 3,107 | — | ||
| bio-genome-engineering-grna-design Design guide RNAs for CRISPR-Cas9/Cas12a experiments using CRISPRscan and local scoring algorithms. Score guides for on-target activity using Rule Set SkillInstall · skills CLI | 3,107 | — | ||
| bio-genome-engineering-hdr-template-design Design homology-directed repair donor templates for CRISPR knock-ins using primer3-py. Create ssODN, dsDNA, or plasmid templates with optimized homolo SkillInstall · skills CLI | 3,107 | — | ||
| bio-genome-engineering-off-target-prediction Predict CRISPR off-target sites using Cas-OFFinder and CFD scoring algorithms. Identify potential unintended cleavage sites genome-wide and assess gui SkillInstall · skills CLI | 3,107 | — | ||
| bio-genome-engineering-prime-editing-design Design pegRNAs for prime editing using PrimeDesign algorithms. Generate spacer, PBS, and RT template sequences for precise genomic modifications witho SkillInstall · skills CLI | 3,107 | — | ||
| bio-hi-c-analysis-compartment-analysis Detect A/B compartments from Hi-C data using cooltools and eigenvector decomposition. Identify active (A) and inactive (B) chromatin compartments from SkillInstall · skills CLI | 3,107 | — | ||
| bio-hi-c-analysis-contact-pairs Process Hi-C read pairs using pairtools. Parse alignments, filter duplicates, classify pairs, and generate contact statistics from Hi-C sequencing dat SkillInstall · skills CLI | 3,107 | — | ||
| bio-hi-c-analysis-hic-data-io Load, convert, and manipulate Hi-C contact matrices using cooler format. Read .cool/.mcool files, convert from .hic format, access matrix data, and ex SkillInstall · skills CLI | 3,107 | — | ||
| bio-hi-c-analysis-hic-differential Compare Hi-C contact matrices between conditions to identify differential chromatin interactions. Compute log2 fold changes, statistical significance, SkillInstall · skills CLI | 3,107 | — | ||
| bio-hi-c-analysis-hic-visualization Visualize Hi-C contact matrices, TADs, loops, and genomic features using matplotlib, cooltools, and HiCExplorer. Create triangle plots, virtual 4C, an SkillInstall · skills CLI | 3,107 | — | ||
| bio-hi-c-analysis-loop-calling Detect chromatin loops and point interactions from Hi-C data using cooltools, chromosight, and HiCCUPS-like methods. Identify CTCF-mediated loops and SkillInstall · skills CLI | 3,107 | — | ||
| bio-hi-c-analysis-matrix-operations Balance, normalize, and transform Hi-C contact matrices using cooler and cooltools. Apply iterative correction (ICE), compute expected values, and gen SkillInstall · skills CLI | 3,107 | — | ||
| bio-hi-c-analysis-tad-detection Call topologically associating domains (TADs) from Hi-C data using insulation score, HiCExplorer, and other methods. Identify domain boundaries and hi SkillInstall · skills CLI | 3,107 | — | ||
| bio-imaging-mass-cytometry-cell-segmentation Cell segmentation from multiplexed tissue images. Covers deep learning (Cellpose, Mesmer) and classical approaches for nuclear and whole-cell segmenta SkillInstall · skills CLI | 3,107 | — | ||
| bio-imaging-mass-cytometry-data-preprocessing Load and preprocess imaging mass cytometry (IMC) and MIBI data. Covers MCD/TIFF handling, hot pixel removal, and image normalization. Use when startin SkillInstall · skills CLI | 3,107 | — | ||
| bio-imaging-mass-cytometry-interactive-annotation Interactive cell type annotation for IMC data. Covers napari-based annotation, marker-guided labeling, training data generation, and annotation valida SkillInstall · skills CLI | 3,107 | — | ||
| bio-imaging-mass-cytometry-phenotyping Cell type assignment from marker expression in IMC data. Covers manual gating, clustering, and automated classification approaches. Use when assigning SkillInstall · skills CLI | 3,107 | — | ||
| bio-imaging-mass-cytometry-quality-metrics Quality metrics for IMC data including signal-to-noise, channel correlation, tissue integrity, and acquisition QC. Use when assessing data quality bef SkillInstall · skills CLI | 3,107 | — | ||
| bio-imaging-mass-cytometry-spatial-analysis Spatial analysis of cell neighborhoods and interactions in IMC data. Covers neighbor graphs, spatial statistics, and interaction testing. Use when ana SkillInstall · skills CLI | 3,107 | — | ||
| bio-immunoinformatics-epitope-prediction Predict B-cell and T-cell epitopes using BepiPred, IEDB tools, and structure-based methods for vaccine and antibody design. Identify immunogenic regio SkillInstall · skills CLI | 3,107 | — | ||
| bio-immunoinformatics-immunogenicity-scoring Score and prioritize neoantigens and epitopes for immunogenicity using multi-factor models combining MHC binding, processing, expression, and sequence SkillInstall · skills CLI | 3,107 | — | ||
| bio-immunoinformatics-mhc-binding-prediction Predict peptide-MHC class I and II binding affinity using MHCflurry and NetMHCpan neural network models. Identify potential T-cell epitopes from prote SkillInstall · skills CLI | 3,107 | — | ||
| bio-immunoinformatics-neoantigen-prediction Identify tumor neoantigens from somatic mutations using pVACtools for personalized cancer immunotherapy. Predict mutant peptides that bind patient HLA SkillInstall · skills CLI | 3,107 | — | ||
| bio-immunoinformatics-tcr-epitope-binding Predict TCR-epitope specificity using ERGO-II and deep learning models for T-cell receptor antigen recognition. Match TCRs to their cognate epitopes o SkillInstall · skills CLI | 3,107 | — | ||
| bio-isoform-switching Analyzes isoform switching events and functional consequences using IsoformSwitchAnalyzeR. Predicts protein domain changes, NMD sensitivity, ORF alter SkillInstall · skills CLI | 3,107 | — | ||
| bio-long-read-sequencing-clair3-variants Deep learning-based variant calling from long reads using Clair3 for SNPs and small indels. Use when calling germline variants from ONT or PacBio alig SkillInstall · skills CLI | 3,107 | — | ||
| bio-long-read-sequencing-isoseq-analysis Analyze PacBio Iso-Seq data for full-length isoform discovery and quantification. Use when characterizing transcript diversity or identifying novel sp SkillInstall · skills CLI | 3,107 | — | ||
| bio-long-read-sequencing-nanopore-methylation Calls DNA methylation from Oxford Nanopore sequencing data using signal-level analysis. Use when detecting 5mC or 6mA modifications directly from nano SkillInstall · skills CLI | 3,107 | — | ||
| bio-longitudinal-monitoring Tracks ctDNA dynamics over time for treatment response monitoring using serial liquid biopsy samples. Analyzes tumor fraction trends, mutation clearan SkillInstall · skills CLI | 3,107 | — | ||
| bio-longread-alignment Align long reads using minimap2 for Oxford Nanopore and PacBio data. Supports various presets for different read types and applications. Use when alig SkillInstall · skills CLI | 3,107 | — | ||
| bio-longread-medaka Polish assemblies and call variants from Oxford Nanopore data using medaka. Uses neural networks trained on specific basecaller versions. Use when imp SkillInstall · skills CLI | 3,107 | — | ||
| bio-longread-qc Quality control for long-read sequencing data using NanoPlot, NanoStat, and chopper. Generate QC reports, filter reads by length and quality, and visu SkillInstall · skills CLI | 3,107 | — | ||
| bio-longread-structural-variants Detect structural variants from long-read alignments using Sniffles, cuteSV, and SVIM. Use when detecting deletions, insertions, inversions, transloca SkillInstall · skills CLI | 3,107 | — | ||
| bio-metabolomics-lipidomics Specialized lipidomics analysis for lipid identification, quantification, and pathway interpretation. Covers LC-MS lipidomics with LipidSearch, MS-DIA SkillInstall · skills CLI | 3,107 | — | ||
| bio-metabolomics-metabolite-annotation Metabolite identification from m/z and retention time. Covers database matching, MS/MS spectral matching, and confidence level assignment. Use when as SkillInstall · skills CLI | 3,107 | — | ||
| bio-metabolomics-msdial-preprocessing MS-DIAL-based metabolomics preprocessing as alternative to XCMS. Covers peak detection, alignment, annotation, and export for downstream analysis. Use SkillInstall · skills CLI | 3,107 | — | ||
| bio-metabolomics-normalization-qc Quality control and normalization for metabolomics data. Covers QC-based correction, batch effect removal, and data transformation methods. Use when c SkillInstall · skills CLI | 3,107 | — | ||
| bio-metabolomics-pathway-mapping Map metabolites to biological pathways using KEGG, Reactome, and MetaboAnalyst. Perform pathway enrichment and topology analysis. Use when interpretin SkillInstall · skills CLI | 3,107 | — | ||
| bio-metabolomics-statistical-analysis Statistical analysis for metabolomics data. Covers univariate testing, multivariate methods (PCA, PLS-DA), and biomarker discovery. Use when identifyi SkillInstall · skills CLI | 3,107 | — | ||
| bio-metabolomics-targeted-analysis Targeted metabolomics analysis using MRM/SRM with standard curves. Covers absolute quantification, method validation, and quality assessment. Use when SkillInstall · skills CLI | 3,107 | — | ||
| bio-metabolomics-xcms-preprocessing XCMS3 workflow for LC-MS/MS metabolomics preprocessing. Covers peak detection, retention time alignment, correspondence (grouping), and gap filling. U SkillInstall · skills CLI | 3,107 | — | ||
| bio-metagenomics-abundance Species abundance estimation using Bracken with Kraken2 output. Redistributes reads from higher taxonomic levels to species for more accurate estimate SkillInstall · skills CLI | 3,107 | — | ||
| bio-metagenomics-amr-detection Detect antimicrobial resistance genes using AMRFinderPlus, ResFinder, and CARD. Screen isolates and metagenomes for resistance determinants. Use when SkillInstall · skills CLI | 3,107 | — | ||
| bio-metagenomics-functional-profiling Profile functional potential of metagenomes using HUMAnN3 and similar tools. Use when obtaining pathway abundances, gene family counts, or functional SkillInstall · skills CLI | 3,107 | — | ||
| bio-metagenomics-kraken Taxonomic classification of metagenomic reads using Kraken2. Fast k-mer based classification against RefSeq database. Use when performing initial taxo SkillInstall · skills CLI | 3,107 | — | ||
| bio-metagenomics-metaphlan Marker gene-based taxonomic profiling using MetaPhlAn 4. Provides accurate species-level relative abundances using clade-specific markers. Use when ac SkillInstall · skills CLI | 3,107 | — | ||
| bio-metagenomics-strain-tracking Track bacterial strains using MASH, sourmash, fastANI, and inStrain. Compare genomes, detect contamination, and monitor strain-level variation. Use wh SkillInstall · skills CLI | 3,107 | — | ||
| bio-metagenomics-visualization Visualize metagenomic profiles using R (phyloseq, microbiome) and Python (matplotlib, seaborn). Create stacked bar plots, heatmaps, PCA plots, and div SkillInstall · skills CLI | 3,107 | — | ||
| bio-methylation-based-detection Analyzes cfDNA methylation patterns for cancer detection using cfMeDIP-seq or bisulfite sequencing with MethylDackel. Identifies cancer-specific methy SkillInstall · skills CLI | 3,107 | — | ||
| bio-methylation-bismark-alignment Bisulfite sequencing read alignment using Bismark with bowtie2/hisat2. Handles genome preparation and produces BAM files with methylation information. SkillInstall · skills CLI | 3,107 | — | ||
| bio-methylation-calling Extract methylation calls from Bismark BAM files using bismark_methylation_extractor. Generates per-cytosine reports for CpG, CHG, and CHH contexts. U SkillInstall · skills CLI | 3,107 | — | ||
| bio-methylation-dmr-detection Differentially methylated region (DMR) detection using methylKit tiles, bsseq BSmooth, and DMRcate. Use when identifying contiguous genomic regions wi SkillInstall · skills CLI | 3,107 | — | ||
| bio-methylation-methylkit DNA methylation analysis with methylKit in R. Import Bismark coverage files, filter by coverage, normalize samples, and perform statistical comparison SkillInstall · skills CLI | 3,107 | — | ||
| bio-microbiome-amplicon-processing Amplicon sequence variant (ASV) inference from 16S rRNA or ITS amplicon sequencing using DADA2. Covers quality filtering, error learning, denoising, a SkillInstall · skills CLI | 3,107 | — | ||
| bio-microbiome-differential-abundance Differential abundance testing for microbiome data using compositionally-aware methods like ALDEx2, ANCOM-BC2, and MaAsLin2. Use when identifying taxa SkillInstall · skills CLI | 3,107 | — | ||
| bio-microbiome-diversity-analysis Alpha and beta diversity analysis for microbiome data. Calculate within-sample richness, evenness, and between-sample dissimilarity with phyloseq and SkillInstall · skills CLI | 3,107 | — | ||
| bio-microbiome-functional-prediction Predict metagenome functional content from 16S rRNA marker gene data using PICRUSt2. Infer KEGG, MetaCyc, and EC abundances from ASV tables. Use when SkillInstall · skills CLI | 3,107 | — | ||
| bio-microbiome-qiime2-workflow QIIME2 command-line workflow for 16S/ITS amplicon analysis. Alternative to DADA2/phyloseq R workflow with built-in provenance tracking. Use when prefe SkillInstall · skills CLI | 3,107 | — | ||
| bio-microbiome-taxonomy-assignment Taxonomic classification of ASVs using reference databases like SILVA, GTDB, or UNITE. Covers naive Bayes classifiers (DADA2, IDTAXA) and exact matchi SkillInstall · skills CLI | 3,107 | — | ||
| bio-molecular-descriptors Calculates molecular descriptors and fingerprints using RDKit. Computes Morgan fingerprints (ECFP), MACCS keys, Lipinski properties, QED drug-likeness SkillInstall · skills CLI | 3,107 | — | ||
| bio-molecular-io Reads, writes, and converts molecular file formats (SMILES, SDF, MOL2, PDB) using RDKit and Open Babel. Handles structure parsing, canonicalization, a SkillInstall · skills CLI | 3,107 | — | ||
| bio-multi-omics-data-harmonization Preprocessing and harmonization of multi-omics data before integration. Covers normalization, batch correction, feature alignment, and missing value h SkillInstall · skills CLI | 3,107 | — | ||
| paper-search Academic paper search via Google Scholar using Serper API SkillInstall · skills CLI | 2,988 | MIT | ||
| research Researches a topic by breaking it into subtopics, gathering factual information with reasoning, and producing a structured summary with key findings a SkillInstall · skills CLI | 2,988 | MIT | ||
| survey-generator Compile a structured literature survey on any AI/ML topic. Agent curates a research bundle (taxonomy + sections + bibliography of real papers) from a SkillInstall · skills CLI | 2,955 | — | ||
| wiki-research-loop Auto-grow a pro-workflow wiki by running a budget-capped BFS research loop over pluggable source fetchers (web, arXiv, GitHub). Each iteration pops a SkillInstall · skills CLI | 2,955 | — | ||
| weather-assistant Retrieves current weather conditions and forecasts for any location worldwide SkillInstall · skills CLI | 2,727 | — | ||
| mom-test Talk to customers without leading them using Mom Test rules: discuss their life not your idea, ask about specifics in the past, and talk less. Use whe SkillInstall · skills CLI | 2,692 | MIT | ||
| ship-learn-next Transform learning content (like YouTube transcripts, articles, tutorials) into actionable implementation plans using the Ship-Learn-Next framework. U SkillInstall · skills CLI | 2,679 | MIT | ||
| clinical-decision-support Prepare and validate research-only clinical decision-support evaluation, evidence-profile, cohort, survival, biomarker/model, privacy, and governance SkillInstall · skills CLI | 2,576 | MIT | ||
| clinical-reports Create safety-bounded draft structures and run local deterministic checks for clinical case, diagnostic, trial, safety, and aggregate research reports SkillInstall · skills CLI | 2,576 | MIT | ||
| hypothesis-generation Formulate evidence-bounded scientific questions, candidate hypotheses, rival explanations, causal or associational claims, discriminating predictions, SkillInstall · skills CLI | 2,576 | MIT | ||
| latex-posters Create professional research posters in LaTeX using beamerposter, tikzposter, or baposter. Support for conference presentations, academic posters, and SkillInstall · skills CLI | 2,576 | MIT | ||
| peer-review Prepare evidence-bounded, constructive peer-review drafts and structured manuscript assessments. Use for authorized review of scientific manuscripts, SkillInstall · skills CLI | 2,576 | MIT | ||
| pptx-posters Create and audit editable scientific posters in macro-free PowerPoint (.pptx) from author-approved local content and assets. Use when the requested de SkillInstall · skills CLI | 2,576 | MIT | ||
| research-lookup Compile current scholarly evidence for a scientific manuscript or research brief. Use when the user explicitly asks to gather literature, references, SkillInstall · skills CLI | 2,576 | MIT | ||
| scholar-evaluation Provide qualitative-first, evidence-traceable developmental review of scholarly works and audit low-stakes research-assessment rubrics with optional l SkillInstall · skills CLI | 2,576 | MIT | ||
| scientific-schematics Create publication-quality scientific diagrams using Nano Banana 2 AI with smart iterative refinement. Uses Gemini 3.6 Flash for quality review. Only SkillInstall · skills CLI | 2,576 | MIT | ||
| treatment-plans Format and structurally validate local treatment-plan documentation after clinical decisions have already been supplied and verified by authorized lic SkillInstall · skills CLI | 2,576 | MIT | ||
| research Conduct preliminary research on a topic and generate research outline. For academic research, benchmark research, technology selection, etc. SkillInstall · skills CLI | 2,554 | MIT | ||
| research 对目标话题进行初步调研，生成调研outline。用于学术调研、benchmark调研、技术选型等场景。 SkillInstall · skills CLI | 2,554 | MIT | ||
| research-add-fields Add field definitions to existing research outline. SkillInstall · skills CLI | 2,554 | MIT | ||
| research-add-fields 向现有调研outline补充字段定义。 SkillInstall · skills CLI | 2,554 | MIT | ||
| research-add-items Add items (research objects) to existing research outline. SkillInstall · skills CLI | 2,554 | MIT | ||
| research-add-items 向现有调研outline补充items（调研对象）。 SkillInstall · skills CLI | 2,554 | MIT | ||
| research-deep Read research outline, launch independent agent for each item for deep research. Disable task output. SkillInstall · skills CLI | 2,554 | MIT | ||
| research-deep 读取调研outline，为每个item启动独立agent进行深度调研。禁用task output。 SkillInstall · skills CLI | 2,554 | MIT | ||
| research-report Summarize deep research results into markdown report, cover all fields, skip uncertain values. SkillInstall · skills CLI | 2,554 | MIT | ||
| research-report 将deep调研结果汇总为markdown报告，覆盖所有字段，跳过不确定值。 SkillInstall · skills CLI | 2,554 | MIT | ||
| ex-ussr-kinship-research Исследует родственные связи и семейную историю по персональным данным и документам с фокусом на бывший СССР, СССР и Российскую империю. Использовать д SkillInstall · skills CLI | 2,422 | MIT | ||
| nihaisha Use this skill when the user asks about Ni Haisha / 倪海厦 TCM course material, especially Shang Han Lun / 伤寒论, Jingui / 金匮要略, Zhongjing Xinfa / 仲景心法, cl SkillInstall · skills CLI | 2,250 | — | ||
| academic-deep-research Transparent, rigorous research with full methodology — not a black-box API wrapper. Conducts exhaustive investigation through mandated 2-cycle researc SkillInstall · skills CLI | 2,192 | MIT | ||
| academic-research-hub Use this skill when users need to search academic papers, download research documents, extract citations, or gather scholarly information. Triggers in SkillInstall · skills CLI | 2,192 | MIT | ||
| aclawdemy The academic research platform for AI agents. Submit papers, review research, build consensus, and push toward AGI — together. SkillInstall · skills CLI | 2,192 | MIT | ||
| addiction-self-assessment Substance use and behavioral addiction self-assessment and harm reduction guidance. Use when someone suspects their drinking or substance use has beco SkillInstall · skills CLI | 2,192 | MIT | ||
| adme-property-predictor Predict ADME (Absorption, Distribution, Metabolism, Excretion) properties for drug candidates using cheminformatics models and molecular descriptors. SkillInstall · skills CLI | 2,192 | MIT | ||
| afrexai-career-accelerator Complete career acceleration system — from self-assessment to offer negotiation. Covers career strategy, job search operations, resume/CV optimization SkillInstall · skills CLI | 2,192 | MIT | ||
| afrexai-personal-finance Complete personal finance system — budgeting, debt payoff, investing, tax optimization, net worth tracking, and financial independence planning. Use w SkillInstall · skills CLI | 2,192 | MIT | ||
| anatomy-quiz-master Generate interactive anatomy quizzes for medical education with multiple question types, difficulty levels, and anatomical regions. Supports gross ana SkillInstall · skills CLI | 2,192 | MIT | ||
| anki-card-creator Convert medical textbook content, lecture notes, and study materials into Anki flashcards using spaced repetition optimization. Supports multiple card SkillInstall · skills CLI | 2,192 | MIT | ||
| earth2037-game OpenClaw-based SLG game. Multiplayer, real-time commands, planning. Battle with other lobsters, build alliances. Use when user says "2037" or "earth20 SkillInstall · skills CLI | 2,192 | MIT | ||
| research-paper-integrity Standards and audits for writing academic papers, especially ML/NLP submissions to NeurIPS, ICML, ICLR, ACL, EMNLP, NAACL. Covers the author's house p SkillInstall · skills CLI | 2,125 | MIT | ||
| active-comparator-single-soc-faers-safety-comparison Generates complete FAERS pharmacovigilance study designs for multi-drug or class-level safety comparison inside one predefined SOC or AE family using SkillInstall · skills CLI | 2,054 | MIT | ||
| aim-and-hypothesis-designer Designs primary aims, secondary aims, and testable hypotheses from broad biomedical research ideas. Use this skill when a user needs to convert a loos SkillInstall · skills CLI | 2,054 | MIT | ||
| animal-and-cell-validation-planner Designs cell-based and animal-based validation plans that translate computational, omics, biomarker, genetic, or clinical findings into experimentally SkillInstall · skills CLI | 2,054 | MIT | ||
| bianque Evidence-based medical knowledge and research mentor grounded in the Bian Que tradition. Covers clinical reasoning, diagnostic thinking (望闻问切), pharma SkillInstall · skills CLI | 2,054 | MIT | ||
| bidirectional-multi-phenotype-mr-research-planner Generates complete bidirectional multi-phenotype Mendelian randomization research designs from a user-provided exposure family and outcome family. Alw SkillInstall · skills CLI | 2,054 | MIT | ||
| bulk-omics-integrative-planner Designs complete integrated research plans for bulk transcriptomics, proteomics, metabolomics, and related omics from a user-provided biomedical direc SkillInstall · skills CLI | 2,054 | MIT | ||
| case-control-study-planner Design a structured case-control study framework with explicit source population logic, control selection rules, matching decisions, exposure measurem SkillInstall · skills CLI | 2,054 | MIT | ||
| clinical-cohort-protocol-designer Designs retrospective or prospective clinical cohort study protocols for biomedical and clinical research. Always use this skill when the user needs a SkillInstall · skills CLI | 2,054 | MIT | ||
| comorbidity-common-immune-biomarker-research-planner Generates complete comorbidity-oriented shared-biomarker bioinformatics research designs from a user-provided disease pair and validation direction. U SkillInstall · skills CLI | 2,054 | MIT | ||
| comparative-network-toxicology-shared-mechanism-reference-grounded Generates complete comparative network-toxicology research designs from a user-provided exposure pair, shared toxic phenotype, and validation directio SkillInstall · skills CLI | 2,054 | MIT | ||
| confounder-and-bias-control-planner Plans confounder control, variable adjustment logic, and bias mitigation strategies at the protocol stage for clinical, epidemiologic, translational, SkillInstall · skills CLI | 2,054 | MIT | ||
| conventional-non-oncology-hub-gene-research-planner Generates complete conventional non-oncology bioinformatics research designs from a user-provided disease context, process-related gene family or biol SkillInstall · skills CLI | 2,054 | MIT | ||
| conventional-oncology-hub-gene-research-planner Generates complete conventional oncology bulk-transcriptome biomarker and hub-gene research designs from a user-provided cancer type and study directi SkillInstall · skills CLI | 2,054 | MIT | ||
| cross-disease-shared-biomarker-network-research-planner Generates complete cross-disease shared-biomarker bioinformatics research designs from a user-provided disease pair and validation direction. Always u SkillInstall · skills CLI | 2,054 | MIT | ||
| drug-repurposing-study-planner Design evidence-discovery and validation workflows for drug repurposing studies by integrating disease mechanisms, drug-target logic, expression rever SkillInstall · skills CLI | 2,054 | MIT | ||
| dual-disease-shared-transcriptome-biomarker-research-planner Generates complete dual-disease shared-transcriptome biomarker and hub-gene research designs from a user-provided disease pair and shared-biology dire SkillInstall · skills CLI | 2,054 | MIT | ||
| endpoint-definition-designer Designs primary, secondary, and exploratory endpoints for biomedical and clinical research protocols. Always use this skill when a user needs to trans SkillInstall · skills CLI | 2,054 | MIT | ||
| faers-pharmacovigilance-disproportionality-research-planner Generates complete FAERS-style pharmacovigilance disproportionality research designs from a user-provided drug class, comparator strategy, adverse-eve SkillInstall · skills CLI | 2,054 | MIT | ||
| feasibility-aware-study-planner Designs a realistic, execution-aware biomedical study version under explicit constraints of samples, time, budget, data access, lab capacity, team ski SkillInstall · skills CLI | 2,054 | MIT | ||
| generic-phenotype-scoring-research-planner Generates complete phenotype-scoring bioinformatics research designs for any disease context and any user-defined phenotype, pathway, process, signatu SkillInstall · skills CLI | 2,054 | MIT | ||
| inclusion-exclusion-criteria-builder Builds clear, executable, and auditable inclusion and exclusion criteria for biomedical and clinical research protocols. Always use this skill when a SkillInstall · skills CLI | 2,054 | MIT | ||
| mechanism-to-validation-planner Extends a mechanistic or association-level biomedical finding into a staged validation pathway that moves from descriptive evidence toward stronger fu SkillInstall · skills CLI | 2,054 | MIT | ||
| medical-research-algorithm-matcher Matches a user’s biomedical research direction, disease problem, study aim, data modality, and resource constraints to the most relevant recent algori SkillInstall · skills CLI | 2,054 | MIT | ||
| medical-research-gap-to-study-planner Converts an audited medical research gap into a complete, structured, gap-traceable study design. Always use this skill whenever a user already has on SkillInstall · skills CLI | 2,054 | MIT | ||
| mendel Gregor Mendel — genetics mentor, patient experimenter, and gardener-monk. Trigger this skill when users ask about genetics, heredity, inheritance patt SkillInstall · skills CLI | 2,054 | MIT | ||
| mendelian-randomization-protocol-designer Generates complete Mendelian randomization study designs from a user-provided exposure and outcome direction. Always use this skill whenever a user wa SkillInstall · skills CLI | 2,054 | MIT | ||
| mr-scrna-research-planner Generates complete Mendelian Randomization + single-cell transcriptomics (scRNA-seq) research designs from a user-provided direction. Always use this SkillInstall · skills CLI | 2,054 | MIT | ||
| multi-omics-clinical-integration-planner Designs complete research plans that integrate clinical variables with multi-omics data from a user-provided biomedical direction. Always use this ski SkillInstall · skills CLI | 2,054 | MIT | ||
| nhanes-clinical-retrospective-biomarker-research-planner Generates complete NHANES-style cross-sectional epidemiology + retrospective clinical validation research designs from a user-provided disease and bio SkillInstall · skills CLI | 2,054 | MIT | ||
| non-tumor-mechanism-guided-diagnostic-ml-research-planner Generates complete conventional non-oncology diagnostic machine-learning research designs from a user-provided disease context, optional mechanism the SkillInstall · skills CLI | 2,054 | MIT | ||
| pcd-immune-oncology-research-planner Generates complete programmed-cell-death (PCD) / regulated-cell-death (RCD) bulk-transcriptome oncology research designs from a user-provided disease SkillInstall · skills CLI | 2,054 | MIT | ||
| primary-plan-recommender Compares multiple study-route options for the same biomedical research question and recommends one primary plan, while explicitly explaining why alter SkillInstall · skills CLI | 2,054 | MIT | ||
| process-related-diagnostic-biomarker-nomogram-research-planner Generates complete process-related diagnostic biomarker bioinformatics research designs from a user-provided disease context, gene-family or pathway t SkillInstall · skills CLI | 2,054 | MIT | ||
| prognostic-biomarker-protocol-designer Designs discovery, modeling, and validation workflows for prognostic biomarkers in biomedical and clinical research. Always use this skill when the us SkillInstall · skills CLI | 2,054 | MIT | ||
| qtl-colocalization-study-planner Designs QTL colocalization studies that connect eQTL, pQTL, sQTL, or related molecular QTL signals with GWAS loci. Always use this skill whenever a us SkillInstall · skills CLI | 2,054 | MIT | ||
| real-world-evidence-study-designer Designs a structured real-world evidence study using EHR, claims, or registry data, with explicit handling of time zero, eligibility windows, exposure SkillInstall · skills CLI | 2,054 | MIT |
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