Categories › Knowledge & Everyday
See all Knowledge & Everyday tools →420 agent tools in this category, ranked by GitHub stars for now. Hands-on test results will replace this ranking as they finish.
The three most-starred tools here. Not tested together yet.
This skill should be used for time series machine learning tasks including classification, regression, clustering, forecasting, anomaly detection, segmentation,
npx skills add K-Dense-AI/scientific-agent-skills --skill aeonHandles annotated matrices in single-cell analysis, .h5ad and Zarr files, and integration with the scverse ecosystem. This is the data format skill—for analysis
npx skills add K-Dense-AI/scientific-agent-skills --skill anndataApplies Arbor Hypothesis Tree Refinement to research artifacts with repeatable evaluators, including model training, agent harnesses, data synthesis and benchma
npx skills add K-Dense-AI/scientific-agent-skills --skill arbor| Tool | Stars | Last update | License | |
|---|---|---|---|---|
| aeon This skill should be used for time series machine learning tasks including classification, regression, clustering, forecasting, anomaly detection, seg SkillInstall · skills CLI | 57,090 | MIT | ||
| anndata Handles annotated matrices in single-cell analysis, .h5ad and Zarr files, and integration with the scverse ecosystem. This is the data format skill—fo SkillInstall · skills CLI | 57,090 | MIT | ||
| arbor Applies Arbor Hypothesis Tree Refinement to research artifacts with repeatable evaluators, including model training, agent harnesses, data synthesis a SkillInstall · skills CLI | 57,090 | MIT | ||
| arboreto Infers candidate gene regulatory networks from bulk or single-cell expression data using AertsLab Arboreto GRNBoost2 and GENIE3. Use for transcription SkillInstall · skills CLI | 57,090 | MIT | ||
| astropy Core Python library for astronomy and astrophysics workflows that need Astropy APIs, including units/quantities, coordinates, FITS I/O, tables, time s SkillInstall · skills CLI | 57,090 | MIT | ||
| benchling-integration Benchling Python SDK and REST API integration for registry entities, inventory, ELN entries, workflows, Benchling Apps, and Data Warehouse queries. Us SkillInstall · skills CLI | 57,090 | MIT | ||
| bids Organizes, queries, validates, and converts Brain Imaging Data Structure (BIDS) datasets. Supports organizing neuroscience and biomedical data (MRI, E SkillInstall · skills CLI | 57,090 | MIT | ||
| biopython Provides Biopython workflows for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entr SkillInstall · skills CLI | 57,090 | MIT | ||
| bioservices Provides a Python interface to bioinformatics services including UniProt, KEGG, ChEMBL, Reactome, QuickGO, and UniChem. Used for cross-database protei SkillInstall · skills CLI | 57,090 | MIT | ||
| bulk-rnaseq Prepares bulk RNA-seq FASTQ, Salmon, STAR or featureCounts output for gene-level differential expression. Covers nf-core/rnaseq and standalone quantif SkillInstall · skills CLI | 57,090 | MIT | ||
| cantera Runs Cantera homogeneous chemical reactors and evaluates ignition delay with mechanism provenance, conservation checks, and numerical refinement. Use SkillInstall · skills CLI | 57,090 | MIT | ||
| cellprofiler Runs reproducible CellProfiler microscopy pipelines for nuclear segmentation, cell counts, and per-object fluorescence measurements. Supports image/ch SkillInstall · skills CLI | 57,090 | MIT | ||
| cellxgene-census Queries the CZ CELLxGENE Census programmatically for versioned public single-cell and spatial transcriptomics data. Use when you need population-scale SkillInstall · skills CLI | 57,090 | MIT | ||
| cirq Google quantum computing framework. Use when targeting Google Quantum AI hardware, designing noise-aware circuits, or running quantum characterization SkillInstall · skills CLI | 57,090 | MIT | ||
| cobrapy Performs constraint-based metabolic modeling with COBRApy, including FBA, pFBA, FVA, gene knockouts, flux sampling, growth media, production envelopes SkillInstall · skills CLI | 57,090 | MIT | ||
| openpiv Performs Particle Image Velocimetry (PIV) analysis with OpenPIV. Use when extracting velocity fields from PIV image pairs, analyzing fluid dynamics or SkillInstall · skills CLI | 57,090 | MIT | ||
| pathml Supports local computational pathology research with PathML: slide loading and tiling, preprocessing and QC, h5path storage, multiplex quantification, SkillInstall · skills CLI | 57,090 | MIT | ||
| pathway-enrichment Performs pathway and gene-set enrichment analysis on gene lists or ranked gene data and interprets the results. Used when the user has a set of genes SkillInstall · skills CLI | 57,090 | MIT | ||
| phylogenetics Builds and analyzes phylogenetic trees using MAFFT multiple sequence alignment, IQ-TREE maximum likelihood with ModelFinder and branch support, and Fa SkillInstall · skills CLI | 57,090 | MIT | ||
| pkpd-modeling Pharmacokinetic and pharmacodynamic modelling and simulation - non-compartmental analysis, compartmental and population PK, PK/PD and exposure-respons SkillInstall · skills CLI | 57,090 | MIT | ||
| primer-design Designs and audits PCR and RT-qPCR primers with Primer3, explicit thermodynamic conditions, reference-based off-target amplification searches, and tra SkillInstall · skills CLI | 57,090 | MIT | ||
| pybamm Simulates lithium-ion battery charge, discharge and rest experiments with PyBaMM, records parameter-set provenance, checks mesh and solver sensitivity SkillInstall · skills CLI | 57,090 | MIT | ||
| pycalphad Computes finite-temperature CALPHAD equilibria, phase fractions, and phase compositions from thermodynamic TDB databases using pycalphad. Use for allo SkillInstall · skills CLI | 57,090 | MIT | ||
| pydeseq2 Performs bulk RNA-seq differential expression analysis with PyDESeq2, including count validation, formula designs, explicit contrasts, Wald tests, FDR SkillInstall · skills CLI | 57,090 | MIT | ||
| pylabrobot Develops and reviews PyLabRobot lab-automation resources, liquid-handling plans, offline simulations, and supported-device integrations. Supports PyLa SkillInstall · skills CLI | 57,090 | MIT | ||
| pymatgen Analyzes, validates, converts, and transforms materials structures and computed materials data with pymatgen. Use for local phase diagrams, symmetry s SkillInstall · skills CLI | 57,090 | MIT | ||
| pyopenms Processes mass spectrometry data with pyOpenMS. Supports proteomics and metabolomics workflows—feature detection, peptide/protein identification, labe SkillInstall · skills CLI | 57,090 | MIT | ||
| pysam Provides Python/HTSlib workflows for genomic files. Used when reading, querying, filtering, or writing SAM/BAM/CRAM, VCF/BCF, FASTA/FASTQ, or tabix da SkillInstall · skills CLI | 57,090 | MIT | ||
| pytdc Provides Therapeutics Data Commons workflows through PyTDC for registry discovery, dataset access, task-aware splits, evaluator metrics, benchmark gro SkillInstall · skills CLI | 57,090 | MIT | ||
| qiime2-amplicon Processes paired-end 16S amplicon reads into QIIME 2 ASVs and taxonomy with retained artifact provenance. Checks paired FASTQ manifests, primer orient SkillInstall · skills CLI | 57,090 | MIT | ||
| qutip Simulate and audit closed and open quantum-system models with QuTiP 5, including deterministic, trajectory, steady-state, spectral, and phase-space wo SkillInstall · skills CLI | 57,090 | MIT | ||
| rdkit Cheminformatics toolkit for fine-grained molecular control. SMILES/SDF parsing, descriptors (MW, LogP, TPSA), fingerprints, substructure search, 2D/3D SkillInstall · skills CLI | 57,090 | MIT | ||
| relion Validates and executes RELION single-particle cryo-EM refinement and half-map postprocessing. Supports STAR optics/acquisition checks, particle-stack SkillInstall · skills CLI | 57,090 | MIT | ||
| relsa-severity-assessment Supports multivariate severity assessment and exploratory endpoint-time score forecasting for laboratory animal studies using the RELSA (RELative Seve SkillInstall · skills CLI | 57,090 | MIT | ||
| rowan Rowan is a cloud-native molecular modeling and medicinal-chemistry workflow platform with a Python API. Use for pKa and macropKa prediction, conformer SkillInstall · skills CLI | 57,090 | MIT | ||
| scanpy Performs Scanpy single-cell RNA-seq QC, normalization, HVG selection, PCA/UMAP/t-SNE, clustering, exploratory marker ranking, pseudobulk preparation, SkillInstall · skills CLI | 57,090 | MIT | ||
| scikit-bio Biological data toolkit. Sequence analysis, alignments, phylogenetic trees, diversity metrics (alpha/beta, UniFrac), ordination (PCoA), PERMANOVA, FAS SkillInstall · skills CLI | 57,090 | MIT | ||
| scikit-survival Builds, evaluates, and audits right-censored or competing-risk survival workflows with scikit-survival, including leakage-safe preprocessing, model se SkillInstall · skills CLI | 57,090 | MIT | ||
| scvelo Performs RNA velocity analysis with scVelo from spliced and unspliced single-cell RNA counts. Fits deterministic or dynamical models, examines gene ph SkillInstall · skills CLI | 57,090 | MIT | ||
| scvi-tools Fits probabilistic models for single-cell omics, including scVI batch integration, scANVI annotation, totalVI CITE-seq, MultiVI RNA/ATAC integration, SkillInstall · skills CLI | 57,090 | MIT | ||
| tamarind Provides access to a collection of open-source molecular design and structural biology tools on the Tamarind Bio platform, via its REST API or MCP ser SkillInstall · skills CLI | 57,090 | MIT | ||
| tellurium Simulates biochemical kinetic models from SBML or Antimony with Tellurium and libRoadRunner, checks model units, compares deterministic parameter pert SkillInstall · skills CLI | 57,090 | MIT | ||
| tiledbvcf Stores and retrieves genomic variant calls with TileDB-VCF. Use for indexed single-sample VCF/BCF ingestion, incremental cohorts, region and sample qu SkillInstall · skills CLI | 57,090 | MIT | ||
| torchdrug Builds and troubleshoots TorchDrug 0.2.1 workflows for molecular graphs, property prediction, self-supervised pretraining, molecule generation, retros SkillInstall · skills CLI | 57,090 | MIT | ||
| uncertainty-and-units Tracks physical units and propagates measurement uncertainty in scientific calculations using pint and uncertainties. Use for unit conversion and dime SkillInstall · skills CLI | 57,090 | MIT | ||
| math-proof Two skills for hard mathematics problems, each ending in a self-contained proof.md: /math-proof:solo has the session work the problem itself in stages PluginAnthropic marketplace | 47,064 | Apache-2.0 | ||
| root-cause-capa Reads sensor history, inspection measurements, maintenance records and prior tickets onto one verified timeline, runs the pattern checks in code rathe SkillOfficial · AnthropicInstall · skills CLI | 47,064 | Apache-2.0 | ||
| general-equilibrium-model-builder Build and solve Walrasian general equilibrium models with theory derivations and Julia computation SkillInstall · skills CLI | 5,013 | — | ||
| cdf-anomalygen Use when running the CDF AnomalyGen pipeline over a defect dataset — mask placement, fine-tuning, synthetic defect-image generation (SDG), evaluation, SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| cdf-augmentation Use when authoring or validating Cosmos Data Factory (CDF) augmentation YAML configs, or running remote Cosmos Transfer (including Cosmos3 WSM control SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| cdf-auto-labeling Use when a user needs to get started with CDF Auto-Labeling, plan a scenario, run or debug a shipped cookbook, author prompts or cookbooks, migrate a SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| cdf-autonomous-vehicle-dataset-generation Prepare payloads, run and monitor the Autonomous Vehicle Dataset Generation Airflow workflow, and inspect results for driving-clip retrieval and Cosmo SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| cdf-curation-and-retrieval NVIDIA CDF curation and retrieval. Cosmos Curator video and image pipelines (split, dedup, shard, annotate) with filtering, captioning, and embedding. SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| cdf-defect-image-generation Generate synthetic PCB inspection images on Kubernetes with the SMT Defect Image Generation (DIG) DAG in CDF Orchestration. The DAG renders components SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| cdf-event-video-generation Run the CDF Orchestration Event Video Generation DAG on Kubernetes or OSMO - image-to-video anomaly generation, auto-labeling, and anomaly dataset gen SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| kermt-add-cmim-pretrain Convert a grover_base checkpoint (encoder-only or encoder + vocab heads) into a hybrid checkpoint by adding a randomly-initialized cMIM decoder + late SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| kermt-continue-pretrain Continue KERMT pretraining on a custom SMILES corpus with a grover_base, cmim, or hybrid checkpoint. Use a local checkpoint or optionally download a p SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| kermt-embed Extract per-molecule embeddings from any encoder-bearing KERMT checkpoint. Use a local checkpoint or optionally download a pinned Hugging Face model b SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| kermt-finetune Finetune a pretrained KERMT encoder on a labeled CSV. Validate the checkpoint and data, prepare features, and run containerized training. Use a local SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| kermt-infer Run predictions with a finetuned KERMT checkpoint on a SMILES-only CSV. The skill validates that the input ckpt has task FFN heads (refuses pretrain c SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| kermt-monitor Check progress for a detached KERMT run (pretrain, finetune, or any kermt_run_detached invocation). Reads run.json, queries docker for container state SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| kermt-pretrain-scratch Pretrain a fresh KERMT model from scratch on a user-provided corpus. Builds a new vocabulary from the corpus, instantiates the model architecture from SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| kermt-setup Bootstrap the KERMT agent environment — verify host docker + nvidia-container-toolkit, build the kermt:latest image from the repo's Dockerfile if it d SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| molmim-nim Use this skill for MolMIM, NVIDIA's BioNeMo NIM microservice for small-molecule latent-space generation and optimization. Invoke for MolMIM, molecular SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| msa-search-nim Generate multiple sequence alignments (MSAs) for protein sequences using the ColabFold MSA-Search NIM. Use for homolog search, UniRef30/ColabFold env SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| msa-structure-prediction-pipeline NOTE: your protein sequence and the retrieved MSA alignment are transmitted to external NVIDIA-hosted APIs (health.api.nvidia.com) on every call. Use SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| nvmolkit-usage Use when writing or debugging nvMolKit Python code for GPU-accelerated RDKit fingerprints, similarity, conformers, clustering, and molecular searches. SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| openfold2-nim Use this skill for OpenFold2, NVIDIA's BioNeMo NIM microservice for monomer protein structure prediction. Invoke whenever the user mentions OpenFold2, SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| openfold3-nim Use this skill for OpenFold3, NVIDIA's BioNeMo NIM microservice for biomolecular structure prediction. Invoke whenever the user mentions OpenFold3 or SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| parabricks Plan NVIDIA Parabricks pbrun commands, translate CPU options and check runtime readiness. Use for individual tools, including planning-only questions. SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| proteinmpnn-nim Run ProteinMPNN inverse folding via NVIDIA NIM to design protein sequences for a target backbone. Sends user-provided PDB files and design parameters SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| rfd4-proteina-nim Run RFD4-Proteina NIM for joint protein structure and sequence design, conditioned generation, and reward-guided search using the NVIDIA hosted API or SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| rfdiffusion-nim Run RFDiffusion protein backbone design via NVIDIA NIM. Use for de novo protein backbones, motif scaffolding, binder design, hotspot residues, contigs SkillInstall · skills CLI | 3,954 | Apache-2.0 | ||
| adaptyv Cloud laboratory platform for automated protein testing and validation. Use when designing proteins and needing experimental validation including bind SkillInstall · skills CLI | 3,816 | Apache-2.0 | ||
| fluidsim Framework for computational fluid dynamics simulations using Python. Use when running fluid dynamics simulations including Navier-Stokes equations (2D SkillInstall · skills CLI | 3,816 | Apache-2.0 | ||
| pymc-bayesian-modeling Compatibility alias for the descriptive PyMC skill name. Delegate to the canonical local `pymc` payload while preserving route and README compatibilit SkillInstall · skills CLI | 3,816 | Apache-2.0 | ||
| statistical-analysis Statistical analysis toolkit. Hypothesis tests (t-test, ANOVA, chi-square), regression, correlation, Bayesian stats, power analysis, assumption checks SkillInstall · skills CLI | 3,816 | Apache-2.0 | ||
| statistics-math Statistics, probability, linear algebra, and mathematical foundations for data science SkillInstall · skills CLI | 3,816 | Apache-2.0 | ||
| statsmodels Statistical modeling toolkit. OLS, GLM, logistic, ARIMA, time series, hypothesis tests, diagnostics, AIC/BIC, for rigorous statistical inference and e SkillInstall · skills CLI | 3,816 | Apache-2.0 | ||
| tiledbvcf Efficient storage and retrieval of genomic variant data using TileDB. Scalable VCF/BCF ingestion, incremental sample addition, compressed storage, par SkillInstall · skills CLI | 3,816 | Apache-2.0 | ||
| torchdrug Graph-based drug discovery toolkit. Molecular property prediction (ADMET), protein modeling, knowledge graph reasoning, molecular generation, retrosyn SkillInstall · skills CLI | 3,816 | Apache-2.0 | ||
| uniprot-database Direct REST API access to UniProt. Protein searches, FASTA retrieval, ID mapping, Swiss-Prot/TrEMBL. For broader biological evidence lookup across dat SkillInstall · skills CLI | 3,816 | Apache-2.0 | ||
| binder-design Guidance for choosing the right protein binder design tool. Use this skill when: (1) Deciding between BoltzGen, BindCraft, or RFdiffusion, (2) Plannin SkillInstall · skills CLI | 3,107 | — | ||
| binding-characterization Guidance for SPR and BLI binding characterization experiments. Use when: (1) Planning binding kinetics experiments, (2) Troubleshooting poor/no bindin SkillInstall · skills CLI | 3,107 | — | ||
| bio-hi-c-analysis-hic-differential Compare Hi-C contact matrices between conditions to identify differential chromatin interactions. Compute log2 fold changes, statistical significance, SkillInstall · skills CLI | 3,107 | — | ||
| bio-hi-c-analysis-hic-visualization Visualize Hi-C contact matrices, TADs, loops, and genomic features using matplotlib, cooltools, and HiCExplorer. Create triangle plots, virtual 4C, an SkillInstall · skills CLI | 3,107 | — | ||
| bio-hi-c-analysis-loop-calling Detect chromatin loops and point interactions from Hi-C data using cooltools, chromosight, and HiCCUPS-like methods. Identify CTCF-mediated loops and SkillInstall · skills CLI | 3,107 | — | ||
| bio-hi-c-analysis-matrix-operations Balance, normalize, and transform Hi-C contact matrices using cooler and cooltools. Apply iterative correction (ICE), compute expected values, and gen SkillInstall · skills CLI | 3,107 | — | ||
| bio-hi-c-analysis-tad-detection Call topologically associating domains (TADs) from Hi-C data using insulation score, HiCExplorer, and other methods. Identify domain boundaries and hi SkillInstall · skills CLI | 3,107 | — | ||
| bio-imaging-mass-cytometry-cell-segmentation Cell segmentation from multiplexed tissue images. Covers deep learning (Cellpose, Mesmer) and classical approaches for nuclear and whole-cell segmenta SkillInstall · skills CLI | 3,107 | — | ||
| bio-imaging-mass-cytometry-data-preprocessing Load and preprocess imaging mass cytometry (IMC) and MIBI data. Covers MCD/TIFF handling, hot pixel removal, and image normalization. Use when startin SkillInstall · skills CLI | 3,107 | — | ||
| bio-imaging-mass-cytometry-interactive-annotation Interactive cell type annotation for IMC data. Covers napari-based annotation, marker-guided labeling, training data generation, and annotation valida SkillInstall · skills CLI | 3,107 | — | ||
| bio-imaging-mass-cytometry-phenotyping Cell type assignment from marker expression in IMC data. Covers manual gating, clustering, and automated classification approaches. Use when assigning SkillInstall · skills CLI | 3,107 | — | ||
| bio-imaging-mass-cytometry-quality-metrics Quality metrics for IMC data including signal-to-noise, channel correlation, tissue integrity, and acquisition QC. Use when assessing data quality bef SkillInstall · skills CLI | 3,107 | — | ||
| bio-imaging-mass-cytometry-spatial-analysis Spatial analysis of cell neighborhoods and interactions in IMC data. Covers neighbor graphs, spatial statistics, and interaction testing. Use when ana SkillInstall · skills CLI | 3,107 | — | ||
| bio-immunoinformatics-epitope-prediction Predict B-cell and T-cell epitopes using BepiPred, IEDB tools, and structure-based methods for vaccine and antibody design. Identify immunogenic regio SkillInstall · skills CLI | 3,107 | — | ||
| bio-immunoinformatics-immunogenicity-scoring Score and prioritize neoantigens and epitopes for immunogenicity using multi-factor models combining MHC binding, processing, expression, and sequence SkillInstall · skills CLI | 3,107 | — | ||
| bio-immunoinformatics-mhc-binding-prediction Predict peptide-MHC class I and II binding affinity using MHCflurry and NetMHCpan neural network models. Identify potential T-cell epitopes from prote SkillInstall · skills CLI | 3,107 | — | ||
| bio-immunoinformatics-neoantigen-prediction Identify tumor neoantigens from somatic mutations using pVACtools for personalized cancer immunotherapy. Predict mutant peptides that bind patient HLA SkillInstall · skills CLI | 3,107 | — | ||
| bio-immunoinformatics-tcr-epitope-binding Predict TCR-epitope specificity using ERGO-II and deep learning models for T-cell receptor antigen recognition. Match TCRs to their cognate epitopes o SkillInstall · skills CLI | 3,107 | — | ||
| bio-isoform-switching Analyzes isoform switching events and functional consequences using IsoformSwitchAnalyzeR. Predicts protein domain changes, NMD sensitivity, ORF alter SkillInstall · skills CLI | 3,107 | — | ||
| bio-long-read-sequencing-clair3-variants Deep learning-based variant calling from long reads using Clair3 for SNPs and small indels. Use when calling germline variants from ONT or PacBio alig SkillInstall · skills CLI | 3,107 | — | ||
| bio-long-read-sequencing-isoseq-analysis Analyze PacBio Iso-Seq data for full-length isoform discovery and quantification. Use when characterizing transcript diversity or identifying novel sp SkillInstall · skills CLI | 3,107 | — | ||
| bio-long-read-sequencing-nanopore-methylation Calls DNA methylation from Oxford Nanopore sequencing data using signal-level analysis. Use when detecting 5mC or 6mA modifications directly from nano SkillInstall · skills CLI | 3,107 | — | ||
| bio-longitudinal-monitoring Tracks ctDNA dynamics over time for treatment response monitoring using serial liquid biopsy samples. Analyzes tumor fraction trends, mutation clearan SkillInstall · skills CLI | 3,107 | — | ||
| bio-longread-alignment Align long reads using minimap2 for Oxford Nanopore and PacBio data. Supports various presets for different read types and applications. Use when alig SkillInstall · skills CLI | 3,107 | — | ||
| bio-longread-medaka Polish assemblies and call variants from Oxford Nanopore data using medaka. Uses neural networks trained on specific basecaller versions. Use when imp SkillInstall · skills CLI | 3,107 | — | ||
| bio-longread-qc Quality control for long-read sequencing data using NanoPlot, NanoStat, and chopper. Generate QC reports, filter reads by length and quality, and visu SkillInstall · skills CLI | 3,107 | — | ||
| bio-longread-structural-variants Detect structural variants from long-read alignments using Sniffles, cuteSV, and SVIM. Use when detecting deletions, insertions, inversions, transloca SkillInstall · skills CLI | 3,107 | — | ||
| bio-metabolomics-lipidomics Specialized lipidomics analysis for lipid identification, quantification, and pathway interpretation. Covers LC-MS lipidomics with LipidSearch, MS-DIA SkillInstall · skills CLI | 3,107 | — | ||
| bio-metabolomics-metabolite-annotation Metabolite identification from m/z and retention time. Covers database matching, MS/MS spectral matching, and confidence level assignment. Use when as SkillInstall · skills CLI | 3,107 | — | ||
| bio-metabolomics-msdial-preprocessing MS-DIAL-based metabolomics preprocessing as alternative to XCMS. Covers peak detection, alignment, annotation, and export for downstream analysis. Use SkillInstall · skills CLI | 3,107 | — | ||
| bio-metabolomics-normalization-qc Quality control and normalization for metabolomics data. Covers QC-based correction, batch effect removal, and data transformation methods. Use when c SkillInstall · skills CLI | 3,107 | — | ||
| bio-metabolomics-pathway-mapping Map metabolites to biological pathways using KEGG, Reactome, and MetaboAnalyst. Perform pathway enrichment and topology analysis. Use when interpretin SkillInstall · skills CLI | 3,107 | — | ||
| bio-metabolomics-statistical-analysis Statistical analysis for metabolomics data. Covers univariate testing, multivariate methods (PCA, PLS-DA), and biomarker discovery. Use when identifyi SkillInstall · skills CLI | 3,107 | — | ||
| bio-metabolomics-targeted-analysis Targeted metabolomics analysis using MRM/SRM with standard curves. Covers absolute quantification, method validation, and quality assessment. Use when SkillInstall · skills CLI | 3,107 | — | ||
| bio-metabolomics-xcms-preprocessing XCMS3 workflow for LC-MS/MS metabolomics preprocessing. Covers peak detection, retention time alignment, correspondence (grouping), and gap filling. U SkillInstall · skills CLI | 3,107 | — | ||
| bio-metagenomics-abundance Species abundance estimation using Bracken with Kraken2 output. Redistributes reads from higher taxonomic levels to species for more accurate estimate SkillInstall · skills CLI | 3,107 | — | ||
| bio-metagenomics-amr-detection Detect antimicrobial resistance genes using AMRFinderPlus, ResFinder, and CARD. Screen isolates and metagenomes for resistance determinants. Use when SkillInstall · skills CLI | 3,107 | — | ||
| bio-metagenomics-functional-profiling Profile functional potential of metagenomes using HUMAnN3 and similar tools. Use when obtaining pathway abundances, gene family counts, or functional SkillInstall · skills CLI | 3,107 | — | ||
| bio-metagenomics-kraken Taxonomic classification of metagenomic reads using Kraken2. Fast k-mer based classification against RefSeq database. Use when performing initial taxo SkillInstall · skills CLI | 3,107 | — | ||
| bio-metagenomics-metaphlan Marker gene-based taxonomic profiling using MetaPhlAn 4. Provides accurate species-level relative abundances using clade-specific markers. Use when ac SkillInstall · skills CLI | 3,107 | — | ||
| bio-metagenomics-strain-tracking Track bacterial strains using MASH, sourmash, fastANI, and inStrain. Compare genomes, detect contamination, and monitor strain-level variation. Use wh SkillInstall · skills CLI | 3,107 | — | ||
| bio-metagenomics-visualization Visualize metagenomic profiles using R (phyloseq, microbiome) and Python (matplotlib, seaborn). Create stacked bar plots, heatmaps, PCA plots, and div SkillInstall · skills CLI | 3,107 | — | ||
| bio-methylation-based-detection Analyzes cfDNA methylation patterns for cancer detection using cfMeDIP-seq or bisulfite sequencing with MethylDackel. Identifies cancer-specific methy SkillInstall · skills CLI | 3,107 | — | ||
| bio-methylation-bismark-alignment Bisulfite sequencing read alignment using Bismark with bowtie2/hisat2. Handles genome preparation and produces BAM files with methylation information. SkillInstall · skills CLI | 3,107 | — | ||
| bio-methylation-calling Extract methylation calls from Bismark BAM files using bismark_methylation_extractor. Generates per-cytosine reports for CpG, CHG, and CHH contexts. U SkillInstall · skills CLI | 3,107 | — | ||
| bio-methylation-dmr-detection Differentially methylated region (DMR) detection using methylKit tiles, bsseq BSmooth, and DMRcate. Use when identifying contiguous genomic regions wi SkillInstall · skills CLI | 3,107 | — | ||
| bio-methylation-methylkit DNA methylation analysis with methylKit in R. Import Bismark coverage files, filter by coverage, normalize samples, and perform statistical comparison SkillInstall · skills CLI | 3,107 | — | ||
| bio-microbiome-amplicon-processing Amplicon sequence variant (ASV) inference from 16S rRNA or ITS amplicon sequencing using DADA2. Covers quality filtering, error learning, denoising, a SkillInstall · skills CLI | 3,107 | — | ||
| bio-microbiome-differential-abundance Differential abundance testing for microbiome data using compositionally-aware methods like ALDEx2, ANCOM-BC2, and MaAsLin2. Use when identifying taxa SkillInstall · skills CLI | 3,107 | — | ||
| bio-microbiome-diversity-analysis Alpha and beta diversity analysis for microbiome data. Calculate within-sample richness, evenness, and between-sample dissimilarity with phyloseq and SkillInstall · skills CLI | 3,107 | — | ||
| bio-microbiome-functional-prediction Predict metagenome functional content from 16S rRNA marker gene data using PICRUSt2. Infer KEGG, MetaCyc, and EC abundances from ASV tables. Use when SkillInstall · skills CLI | 3,107 | — | ||
| bio-microbiome-qiime2-workflow QIIME2 command-line workflow for 16S/ITS amplicon analysis. Alternative to DADA2/phyloseq R workflow with built-in provenance tracking. Use when prefe SkillInstall · skills CLI | 3,107 | — | ||
| bio-microbiome-taxonomy-assignment Taxonomic classification of ASVs using reference databases like SILVA, GTDB, or UNITE. Covers naive Bayes classifiers (DADA2, IDTAXA) and exact matchi SkillInstall · skills CLI | 3,107 | — | ||
| bio-molecular-descriptors Calculates molecular descriptors and fingerprints using RDKit. Computes Morgan fingerprints (ECFP), MACCS keys, Lipinski properties, QED drug-likeness SkillInstall · skills CLI | 3,107 | — | ||
| bio-molecular-io Reads, writes, and converts molecular file formats (SMILES, SDF, MOL2, PDB) using RDKit and Open Babel. Handles structure parsing, canonicalization, a SkillInstall · skills CLI | 3,107 | — | ||
| bio-multi-omics-data-harmonization Preprocessing and harmonization of multi-omics data before integration. Covers normalization, batch correction, feature alignment, and missing value h SkillInstall · skills CLI | 3,107 | — | ||
| CPU Performance Engineering A CPU performance engineering brain: a vetted reading list, benchmarks and cited source passages MCP serverGitHub-verified authorLocal · PyPI | 1,159 | MIT | ||
| OpenTakeoff Construction takeoff for AI agents: load plans, set scale, measure, count, export with provenance. MCP serverGitHub-verified authorLocal · npm | 803 | AGPL-3.0 | ||
| flydsl-kernel-authoring Comprehensive reference for authoring FlyDSL GPU kernels on AMD GPUs. Covers the layout algebra, tiled copy/MMA, buffer ops, loop-carried range loops, SkillInstall · skills CLI | 490 | MIT | ||
| TraceWeave Portable MCP runtime for RTL logs and VCD; repository setup adds FSDB and site EDA integration MCP serverGitHub-verified authorLocal · PyPI | 131 | MIT | ||
| Multisim MCP Generate Multisim circuits, run simulations, export data, and create experiment reports. MCP serverGitHub-verified authorLocal · PyPI | 39 | MIT | ||
| io.github.luarss/openroad-mcp The OpenROAD MCP server - interactive EDA sessions via Model Context Protocol MCP serverGitHub-verified authorLocal · PyPI | 35 | BSD-3-Clause | ||
| BrainFlow Biosensing Boards MCP server for EEG/EMG/ECG/PPG boards via BrainFlow (OpenBCI, Muse, Neurosity, Unicorn, BrainBit). MCP serverGitHub-verified authorLocal · PyPI | 30 | Apache-2.0 | ||
| EPICS Channel Access MCP server for EPICS Channel Access: read, monitor and guarded writes of process variables. MCP serverGitHub-verified authorLocal · PyPI | 30 | Apache-2.0 | ||
| Generic SCPI Instrument Generic MCP server for any SCPI instrument over VISA, TCP or serial, with command allow/deny lists. MCP serverGitHub-verified authorLocal · PyPI | 30 | Apache-2.0 | ||
| IKA Hotplate & Overhead Stirrer MCP server for IKA hotplate stirrers and overhead stirrers (NAMUR commands). MCP serverGitHub-verified authorLocal · PyPI | 30 | Apache-2.0 | ||
| JULABO Circulator MCP server for JULABO heating and refrigerated circulators (CORIO, MAGIO, DYNEO). MCP serverGitHub-verified authorLocal · PyPI | 30 | Apache-2.0 | ||
| Keithley SourceMeter SMU MCP server for Keithley SourceMeter SMUs (2400 series SCPI, 2450 family SCPI, 2600B TSP). MCP serverGitHub-verified authorLocal · PyPI | 30 | Apache-2.0 | ||
| LabJack T-series DAQ MCP server for LabJack T4, T7/T7-Pro and T8 DAQ devices (LJM). MCP serverGitHub-verified authorLocal · PyPI | 30 | Apache-2.0 | ||
| Lake Shore Temperature Controller MCP server for Lake Shore Cryotronics 335/336/350 temperature controllers. MCP serverGitHub-verified authorLocal · PyPI | 30 | Apache-2.0 | ||
| LC-MS Worklist Builder MCP server that builds and validates LC-MS worklists for MassLynx, SCIEX OS, MassHunter, Xcalibur. MCP serverGitHub-verified authorLocal · PyPI | 30 | Apache-2.0 | ||
| Mass Spectrometry Data (mzML, Bruker TDF, vendor conversion) MCP server for LC-MS data in mzML/mzMLb and Bruker timsTOF files; vendor formats via msconvert. MCP serverGitHub-verified authorLocal · PyPI | 30 | Apache-2.0 | ||
| Mettler Toledo Balance MCP server for Mettler Toledo laboratory balances (MT-SICS): weigh, tare, zero, log drift, adjust. MCP serverGitHub-verified authorLocal · PyPI | 30 | Apache-2.0 | ||
| Micro-Manager Microscope MCP server for microscopes controlled by Micro-Manager (pymmcore-plus). MCP serverGitHub-verified authorLocal · PyPI | 30 | Apache-2.0 | ||
| New Era Syringe Pump MCP server for New Era Pump Systems syringe pumps (NE-1000 family, RS-232). MCP serverGitHub-verified authorLocal · PyPI | 30 | Apache-2.0 | ||
| NI-DAQmx DAQ Devices MCP server for National Instruments DAQ devices (NI-DAQmx). MCP serverGitHub-verified authorLocal · PyPI | 30 | Apache-2.0 | ||
| Ocean Insight Spectrometer MCP server for Ocean Insight / Ocean Optics spectrometers (python-seabreeze). MCP serverGitHub-verified authorLocal · PyPI | 30 | Apache-2.0 | ||
| Opentrons OT-2 / Flex MCP server for Opentrons OT-2 and Flex liquid-handling robots (HTTP API). MCP serverGitHub-verified authorLocal · PyPI | 30 | Apache-2.0 | ||
| PalmSens Potentiostat MCP server for PalmSens potentiostats running MethodSCRIPT (EmStat Pico, EmStat4, Sensit, Nexus). MCP serverGitHub-verified authorLocal · PyPI | 30 | Apache-2.0 | ||
| Pfeiffer Vacuum Gauge Controller MCP server for Pfeiffer Vacuum TPG 361/362/366 and TPG 261/262 gauge controllers. MCP serverGitHub-verified authorLocal · PyPI | 30 | Apache-2.0 | ||
| Rigol Oscilloscope MCP server for Rigol oscilloscopes (DS1000Z, MSO5000, DHO series): measurements and waveforms. MCP serverGitHub-verified authorLocal · PyPI | 30 | Apache-2.0 | ||
| Sartorius Balance MCP server for Sartorius laboratory balances (SBI protocol). MCP serverGitHub-verified authorLocal · PyPI | 30 | Apache-2.0 | ||
| SiLA 2 Bridge MCP bridge to any SiLA 2 server (lab-automation standard). MCP serverGitHub-verified authorLocal · PyPI | 30 | Apache-2.0 | ||
| SRS Lock-in Amplifier MCP server for Stanford Research Systems lock-in amplifiers (SR810/SR830, SR860/SR865A). MCP serverGitHub-verified authorLocal · PyPI | 30 | Apache-2.0 | ||
| SRS Residual Gas Analyzer MCP server for SRS RGA100/200/300 residual gas analyzers. MCP serverGitHub-verified authorLocal · PyPI | 30 | Apache-2.0 | ||
| Tecan Cavro Syringe Pump MCP server for Tecan Cavro syringe pumps (XLP 6000, XMP 6000, XCalibur) over the DT protocol. MCP serverGitHub-verified authorLocal · PyPI | 30 | Apache-2.0 | ||
| Thermo Orbitrap (Instrument API) MCP server adapter for Thermo Fisher Orbitrap mass spectrometers via the licensed Instrument API. MCP serverGitHub-verified authorLocal · PyPI | 30 | Apache-2.0 | ||
| Thorlabs Optical Power Meter MCP server for Thorlabs optical power meters (PM100 family, PM400, PM101, PM5020) over SCPI. MCP serverGitHub-verified authorLocal · PyPI | 30 | Apache-2.0 | ||
| Jaxonomy — hybrid dynamical systems on JAX Build, simulate and calibrate JAX block-diagram models of hybrid dynamical systems. MCP serverGitHub-verified authorLocal · PyPI | 22 | MIT | ||
| Dense Evolution Real quantum circuit simulator, VQE, molecular Hamiltonians, QM/MM forces, and MD via 21 tools. MCP serverGitHub-verified authorLocal · PyPI | 19 | AGPL-3.0 | ||
| Arc Free Skills 100 systems and hardware engineering skills for requirements, interfaces, budgets and verification. MCP serverGitHub-verified authorLocal · PyPI | 13 | MIT | ||
| Arc Skills 100 systems and hardware engineering skills for requirements, interfaces, budgets and verification. MCP serverGitHub-verified authorLocal · PyPI | 13 | MIT | ||
| ADCIRC Model Setup MCP Server ADCIRC model configuration debugging, parameter lookup, and validation MCP serverGitHub-verified authorLocal · PyPI | 10 | MIT | ||
| ADCIRC Model Setup MCP Server ADCIRC model configuration debugging, parameter lookup, and validation MCP serverGitHub-verified authorLocal · PyPI | 10 | MIT | ||
| SCHISM Model Setup MCP Server SCHISM model configuration debugging, parameter lookup, and validation MCP serverGitHub-verified authorLocal · PyPI | 10 | MIT | ||
| SCHISM Model Setup MCP Server SCHISM model configuration debugging, parameter lookup, and validation MCP serverGitHub-verified authorLocal · PyPI | 10 | MIT | ||
| VDatum MCP Server MCP server for vertical datum conversions using coastalmodeling-vdatum MCP serverGitHub-verified authorLocal · PyPI | 10 | MIT | ||
| Motor Current Signature Analysis MCP server for Motor Current Signature Analysis — fault detection in electric motors MCP serverGitHub-verified authorLocal · PyPI | 9 | MIT | ||
| io.github.antonpogrebenko-public/rftools 257 RF & electronics calculators + 14 simulation tools for AI agents. MCP serverGitHub-verified authorLocal · npm | 8 | MIT | ||
| io.github.dushyant30suthar/endiagram-mcp EN Diagram — structural verification for concurrent systems. Pure math, no AI. MCP serverGitHub-verified authorLocal · npm | 8 | MIT | ||
| OpenHCS Inspect, author, validate, and run high-content microscopy workflows. MCP serverGitHub-verified authorLocal · PyPI | 7 | MIT | ||
| gnomancer Local raw DNA analysis: haplogroups, traits, ClinVar, pharmacogenomics. Nothing is uploaded. MCP serverVerified domain · gnomancer.comLocal · PyPI | 5 | MIT | ||
| FERS — structural FEM Structural FEM for AI agents: frames, plates, buckling, seismic and Eurocode checks, solved locally. MCP serverVerified domain · ferscloud.comLocal · npm | 4 | BSD-3-Clause | ||
| HEA-Bench High-entropy alloy and oxide descriptors, phase rules, corpus, properties, and design tools. MCP serverGitHub-verified authorLocal · PyPI | 3 | MIT | ||
| Industrial-AIOps Energy Read-only IEC-104, DNP3 and IEC 61850 monitoring with governed MCP tools for energy systems. MCP serverGitHub-verified authorLocal · PyPI | 3 | MIT | ||
| Nimbus BCI BCI/EEG toolkit: public MOABB/BNCI datasets, pipeline build/validate, hosted training, BIDS export. MCP serverGitHub-verified authorLocal · PyPI | 3 | Apache-2.0 | ||
| Cernion Energy Tools MCP Energy-domain MCP tools for Cernion context, evidence and guarded process preparation MCP serverVerified domain · cernion.deRemoteSign-in needed | 2 | GPL-3.0 | ||
| cmxflow Composable, tunable cheminformatics workflows: library preparation, clustering, docking, and more. MCP serverGitHub-verified authorLocal · PyPI | 2 | MIT | ||
| FEA (finite element analysis) Real FEA on CAD parts: validated setups, stress, safety factor, natural frequencies MCP serverGitHub-verified authorRemoteSign-in needed | 2 | Apache-2.0 | ||
| io.github.breezefeng/deepnatal Natal charts cross-verified three ways. Refuses to answer rather than guess. MCP serverGitHub-verified authorLocal · npm | 2 | MIT | ||
| io.github.JonesRobM/physbound Physical Layer Linter: validates RF and radar calculations against hard physical limits. MCP serverGitHub-verified authorLocal · PyPI | 2 | MIT | ||
| LensHH-LT Optical Design Drive real optical lens design: ray tracing, optimization, MTF and aberration analysis. MCP serverVerified domain · synapseoptics.com | 2 | — | ||
| Source Parts Electronic component sourcing, BOM management, and PCB design workflows. MCP serverGitHub-verified authorLocal · PyPI | 2 | Apache-2.0 | ||
| SSTIM MCP: Senses, Stimuli and Perception SSTIM reference for senses, stimuli, perception and scientific contributions. MCP serverGitHub-verified authorLocal · npm | 2 | Apache-2.0 | ||
| China With Me — Hardware Prototyping & Exhibition MCP China hardware prototyping, verified trade show calendar, remote exhibition viewer & sourcing. MCP serverVerified domain · chinawithme.comRemote● LiveFree to try | 1 | MIT | ||
| com.feode/feode-mcp FEODE: AI-accessible precision machining & testing; offshore P&A, subsea wellhead, drill-pipe MCP serverVerified domain · feode.comRemote● LiveFree to try | 1 | MIT | ||
| Cooling Planner MCP simulator for dairy barn cooling: evaluate equipment, roof and weather on heat, water and milk. MCP serverGitHub-verified authorRemoteSign-in needed | 1 | — | ||
| Earthscope Fdsn FDSN seismic web services MCP — seismometer metadata, data holdings and regional earthquake… MCP serverBulk publisher · 1,915 entriesGitHub-verified authorLocal · npm | 1 | MIT | ||
| GWAS Bioinformatics MCP Server Access 30+ bioinformatics tools from 14 databases. MCP serverGitHub-verified authorLocal · PyPI | 1 | MIT | ||
| io.github.AzielEliab/trades-runtime Local shadow MCP for HVAC, plumbing, electrical, and sewer. Read-only. Not a hosted OS. MCP serverGitHub-verified authorRemote● Live | 1 | Apache-2.0 | ||
| io.github.Cropgraph/cropgraph CropGraph MCP. Crops, companions, pests, rotation, soil, GDD, pest intelligence. MCP serverGitHub-verified authorLocal · npm | 1 | MIT | ||
| io.github.daedalus/mcp-oeis MCP server for the OEIS (Online Encyclopedia of Integer Sequences) API MCP serverGitHub-verified authorLocal · PyPI | 1 | MIT | ||
| io.github.daedalus/mcp-parigp MCP server exposing cypari2 (PARI/GP) number theory library MCP serverGitHub-verified authorLocal · PyPI | 1 | MIT | ||
| io.github.daedalus/mcp-z3-prover MCP server exposing Z3 solver API MCP serverGitHub-verified authorLocal · PyPI | 1 | MIT | ||
| io.github.danpeig/plutocalcdesigner-mcp Plutocalc Designer is a software suite for water and wastewater treatment plants design MCP serverGitHub-verified author | 1 | — | ||
| Laplace’s Mini World Interactive 3D science models in Chinese and English, found and shown live in the chat. MCP serverGitHub-verified authorRemote● LiveFree to try | 1 | — | ||
| Math board A local, view-only chalkboard the model draws on: equations, plots, molecules and diagrams. MCP serverGitHub-verified authorLocal · npm | 1 | — | ||
| SolidWorks Model, measure and verify parametric parts and assemblies in a running SolidWorks (Windows). MCP serverGitHub-verified authorLocal · PyPI | 1 | MIT | ||
| Space Standards Cited, requirement-level Q&A over ECSS and NASA standards you supply (bring your own documents) MCP serverGitHub-verified authorLocal · PyPI | 1 | Apache-2.0 | ||
| 3D CAD Converter Convert STEP, IGES, STL, OBJ, FBX, glTF and 3MF files on your Windows PC, one file or a folder MCP serverVerified domain · contenta-software.comLocal · npm | 0 | MIT | ||
| 3DPACK.ING — 3D Bin Packing 3D bin packing for freight in Claude & ChatGPT: cartons and pallets, the fit, a 3D plan in the chat. MCP serverVerified domain · 3dpack.ingRemoteSign-in needed | 0 | MIT | ||
| 3DPACK.ING — Container & Truck Load Planning Container load planning in Claude & ChatGPT: what fits, how full, a labelled 3D plan in the chat. MCP serverVerified domain · 3dpack.ingLocal · npm | 0 | MIT | ||
| 3DPACK.ING — Load Planning Load planning for containers, trucks & pallets in Claude & ChatGPT, with a 3D load plan in the chat. MCP serverVerified domain · 3dpack.ingRemoteSign-in needed | 0 | MIT | ||
| 3DPACK.ING — Truck Load Planning Truck & trailer load planning in Claude & ChatGPT: what fits, how full, a labelled 3D plan in chat. MCP serverVerified domain · 3dpack.ingRemoteSign-in needed | 0 | MIT | ||
| Agro GPS Plant protection product registers of 30 countries, free; plus your farm notebook and finances MCP serverVerified domain · agrogps.euLocal · npm | — | — | ||
| Aguasto Engineering Calculators Educational model-memory, facility-energy and completed-token cost calculations. MCP serverVerified domain · www.aguasto.comRemote● Live | — | — | ||
| ai.structupath/steel-tools Steel takeoff, weight and gauge calculators plus RFQ, RFI, NCR and Bluebeam markup generators. MCP serverVerified domain · structupath.aiRemote● Live | — | — | ||
| AOI — Environmental Intelligence for AI Agents Environmental intelligence for AI agents — climate, carbon, methane. Quote-first, prepaid. MCP serverGitHub-verified authorRemote● LiveFree to try | 0 | MIT | ||
| Arc Flash Platform — Estudos Elétricos Cálculos de engenharia elétrica pela norma brasileira (NBR), validados, com citação normativa. MCP serverGitHub-verified authorRemote● LiveFree to try | — | — | ||
| Arctura Reef — counterfactual evidence engine (synthetic) Deterministic same-seed but-for twin for battery fleets — synthetic-only (DR-236) MCP serverGitHub-verified authorRemoteSign-in needed | — | — | ||
| Ask Helena Official answers about Helena Bioinformatics and its products, with citations to public sources. MCP serverGitHub-verified authorRemote● LiveFree to try | — | — | ||
| askBrassica Brassica and canola genes, pangenomes, stress expression, genotypes, germplasm and papers MCP serverVerified domain · plantdatabases.orgRemote● LiveFree to try | — | — | ||
| askPulse Pulse and legume genes, LIS gene families, expression, QTL, germplasm and papers MCP serverVerified domain · plantdatabases.orgRemote● LiveFree to try | — | — | ||
| askWheat Wheat genes, Watkins pangenome, EMS mutants, expression, genotypes, germplasm and papers (WheatIS) MCP serverVerified domain · plantdatabases.orgRemote● LiveFree to try | — | — | ||
| Astro API Astronomical logical calculator for AI clients. MCP serverGitHub-verified authorRemote● LiveFree to try | — | — | ||
| Atlarium Habitat Database MCP Structured habitat data and advisory tools for aquariums, marine tanks, terrariums and paludariums. MCP serverVerified domain · atlarium.bioRemote● LiveFree to try | 0 | MIT | ||
| calc.engineer 88 free engineering calculators: RF link budgets, LoRa/Meshtastic, PCB, solar, homelab. Keyless. MCP serverVerified domain · calc.engineerRemote● Live | — | — | ||
| Calculate Pool Swimming pool math: volume in gallons, chemical doses, pump flow and heater BTU for any pool. MCP serverVerified domain · calculatepool.comRemote● Live | — | — | ||
| CalvingWatch Public Knowledge Read-only CalvingWatch product, tester, camera, privacy and safety facts; no customer data. MCP serverVerified domain · calvingwatch.comRemote● LiveFree to try | — | — | ||
| Captia Industrial Knowledge Industrial glossary, protocol reference, technical search and OEE calculation. Read-only. MCP serverVerified domain · captiatechnology.comRemote● LiveFree to try | — | — | ||
| Carbonara freight CO2e Freight CO2e by road, rail, sea, inland waterway and air (GLEC, ISO 14083), every step shown MCP serverGitHub-verified authorRemoteDown | — | — | ||
| Circuit Sim Lab (電路模擬實驗室) PCB calculators: trace impedance, crosstalk, diff skew, crystal load cap, Vout tolerance, inrush. MCP serverVerified domain · enscon.aiRemote● Live | — | — | ||
| com.civilquants/civilquants Parametric estimating engine: CESMM4/NRM2/SMM7/MMHW Bills of Quantities for civils assemblies. MCP serverVerified domain · civilquants.comRemote● LiveFree to try | — | — | ||
| com.peopleprincipia/principia Source-graded registry of organizational measurement: constructs, priors, instruments, citations. MCP serverVerified domain · peopleprincipia.comRemoteDown | — | — | ||
| com.seqbench/workbench Hosted DNA/RNA/protein tools: primers, oligos, PCR, cloning, CRISPR, alignment, batch & pipelines. MCP serverVerified domain · seqbench.comRemote● LiveFree to try | — | — | ||
| com.usephysics/physics-calculators Physics calculators that show their work, plus the CODATA 2022 constants. Educational use. MCP serverVerified domain · usephysics.comRemote● LiveFree to try | — | — | ||
| Commonlands Optics: M12 Lens and C-Mount Lens Finder + Field-of-View Calculator M12 lens and C-mount lens finder with image-sensor matching and field-of-view calculator. MCP serverVerified domain · commonlands.comRemote● LiveFree to try | 0 | Apache-2.0 | ||
| compatsy 3D printing What fits, with live prices: specs, fit verdicts with rule ids and stock for 3D printing. MCP serverVerified domain · compatsy.comRemote● Live | 0 | MIT | ||
| Coolprop coolprop — thermophysical fluid properties (PropsSI-style: give two independent state variables… MCP serverBulk publisher · 1,915 entriesGitHub-verified authorLocal · npm | 0 | MIT | ||
| Coordinates Coordinate geometry MCP. MCP serverBulk publisher · 1,915 entriesGitHub-verified authorLocal · npm | 0 | MIT | ||
| Crystallography Crystallography Open Database (COD) MCP. MCP serverBulk publisher · 1,915 entriesGitHub-verified authorLocal · npm | 0 | MIT | ||
| CutOptim Engine Cutting optimization: 2D panels, 1D bars, timber and true-shape nesting via the CutOptim API. MCP serverGitHub-verified authorLocal · npm | 0 | MIT | ||
| den — Korean AEC knowledge, curated Curated Korean AEC expertise for AI agents: KDS·KCS·KS, building law, practice, and the reasoning. MCP serverVerified domain · den.archiRemote● Live | 0 | Apache-2.0 | ||
| Digital Gemology: gem identification and gemstone properties Identify 36 gems by refractive index, birefringence, SG, pleochroism and spectrum; cut scores in 30 MCP serverVerified domain · digitalgemology.comRemote● Live | 0 | — | ||
| Digital Gemology: gemstone and diamond cut library Gemstone and diamond cuts: ray-traced brilliance, fire and sparkle in 26 gems, 3D and faceting files MCP serverVerified domain · digitalgemology.comRemote● LiveFree to try | 0 | — | ||
| DiscreteRate Run DRS demos (Fast-Slow Drain, Hamburger Duo, Valdez Tanker) and explore the paradigm. MCP serverVerified domain · discreterate.comRemote● LiveFree to try | — | — | ||
| Ebi Ols EBI OLS4 MCP — Ontology Lookup Service. MCP serverBulk publisher · 1,915 entriesGitHub-verified authorLocal · npm | 0 | MIT | ||
| Eclipse Environment MCP The smart-environment module — scopes an agent's authority to actuate a home, tier by tier, and MCP serverGitHub-verified author | — | — | ||
| EngScript Engineering MCP Engineering calculation MCP server for oil and gas engineering applications. MCP serverVerified domain · engscript.comRemote● Live | — | — | ||
| Environment Nature Mcp MCP server for Environment & Nature MCP serverGitHub-verified authorRemoteDown | 0 | — | ||
| EOSL.ai — Hardware End-of-Life Database Hardware end-of-life dates by part number, each linked to the vendor's own bulletin. MCP serverVerified domain · eosl.aiRemote● LiveFree to try | — | — | ||
| Epa Aqs EPA AQS MCP — the Air Quality System, EPA's regulatory-grade air monitoring archive MCP serverBulk publisher · 1,915 entriesGitHub-verified authorLocal · npm | 0 | MIT | ||
| Eu Pesticides eu-pesticides -- EU approval status of pesticide active substances. MCP serverBulk publisher · 1,915 entriesGitHub-verified authorLocal · npm | 0 | MIT | ||
| Execute ashrae-compliance-mcp Premium agentic endpoint for ashrae-compliance-mcp. MCP serverBulk publisher · 375 entriesGitHub-verified authorRemote● Live | — | — | ||
| Execute cloth-physics-solver-mcp Premium agentic endpoint for cloth-physics-solver-mcp. MCP serverBulk publisher · 375 entriesGitHub-verified authorRemote● Live | — | — | ||
| Execute co2-inference-calculator-mcp Premium agentic endpoint for co2-inference-calculator-mcp. MCP serverBulk publisher · 375 entriesGitHub-verified authorRemote● Live | — | — | ||
| Exoplanet Archive NASA Exoplanet Archive MCP. MCP serverBulk publisher · 1,915 entriesGitHub-verified authorLocal · npm | 0 | MIT | ||
| Expression Atlas EBI Expression Atlas MCP. MCP serverBulk publisher · 1,915 entriesGitHub-verified authorLocal · npm | 0 | MIT | ||
| Faostat FAOSTAT MCP — the UN Food and Agriculture Organization's statistics service. MCP serverBulk publisher · 1,915 entriesGitHub-verified authorLocal · npm | 0 | MIT | ||
| Fas FAS MCP — USDA Foreign Agricultural Service (trade & global production data) MCP serverBulk publisher · 1,915 entriesGitHub-verified authorLocal · npm | 0 | MIT | ||
| fmcg.network USDA FoodData Central nutrient lookup, FDA recall watch, EU FMCG labelling via remote MCP MCP serverVerified domain · fmcg.networkRemote● LiveFree to try | — | — | ||
| Food Feeds Food Feeds MCP. MCP serverBulk publisher · 1,915 entriesGitHub-verified authorLocal · npm | 0 | MIT | ||
| Fracfocus fracfocus -- U.S. hydraulic fracturing chemical disclosures (fleet #2982). MCP serverBulk publisher · 1,915 entriesGitHub-verified authorLocal · npm | 0 | MIT | ||
| Fruityvice Fruityvice MCP — wraps Fruityvice API (free, no auth) MCP serverBulk publisher · 1,915 entriesGitHub-verified authorLocal · npm | 0 | MIT | ||
| Furriq Cat Breed Identifier Identify cat breeds from descriptions or photos with furriq.com's 61-breed database. MCP serverVerified domain · furriq.comRemote● LiveFree to try | — | — | ||
| Gage Price a building in light-gauge steel framing and start it with the nearest Gage fabricator. MCP serverVerified domain · buildwithgage.comRemote● Live | — | — | ||
| Genoplot Ancestry on G25 and raw DNA: nMonte fits, PCAs, GEDmatch-style and G25 calculators, qpAdm models. MCP serverVerified domain · genoplot.comRemoteSign-in needed | — | — | ||
| GeoMaster GeoEngine Geosteering AI for GeoMaster projects: well position, GeoMatch checks, versions, DrillTracker. MCP serverVerified domain · geomaster.ukRemoteSign-in needed | — | — | ||
| GroundTruth — subsurface scan QA & trade estimating Two independent AI models read a GPR, locate or pipe scan and flag the do-not-core call. MCP serverVerified domain · gtfi.aiRemote● LiveFree to try | 0 | MIT | ||
| Gtex GTEx MCP. MCP serverBulk publisher · 1,915 entriesGitHub-verified authorLocal · npm | 0 | MIT | ||
| Guidetopharmacology IUPHAR/BPS Guide to PHARMACOLOGY (GtoPdb) MCP — BYO key. Expert-curated pharmacology database of… MCP serverBulk publisher · 1,915 entriesGitHub-verified authorLocal · npm | 0 | MIT | ||
| Gwas Catalog GWAS Catalog (EBI/NHGRI) MCP — curated catalog of genome-wide association studies. Look up a SNP… MCP serverBulk publisher · 1,915 entriesGitHub-verified authorLocal · npm | 0 | MIT | ||
| Harness Atlas Search 650+ wire-harness & cable-assembly manufacturers and production & test equipment suppliers. MCP serverGitHub-verified authorRemote● LiveFree to try | 0 | MIT | ||
| Hive Ledger — deterministic varroa treatment rotation Checks a beekeeping varroa treatment rotation for resistance risk and withdrawal-period conflicts. MCP serverVerified domain · hive-ledger.rowb.appRemote● LiveAPI key needed | — | — | ||
| HornLib — Interactive French Horn F/Bb Double Horn Fingering & Harmonics Engine Look up French Horn F/Bb double horn valve fingerings, trigger combinations & partials. MCP serverVerified domain · hornlib.comRemote● LiveFree to try | 0 | — | ||
| Huiyao Capacity Calculator Estimate theoretical and OEE-adjusted annual battery line capacity. MCP serverVerified domain · www.huiyaolaser.comRemote● Live | — | — | ||
| HVAC Builder Design, solve and simulate HVAC systems from real components, weather years and buildings. MCP serverVerified domain · hvacbuilder.appRemoteSign-in needed | — | — | ||
| HYRR Radio-isotope production, activity and dose for charged-particle beams on stacked targets MCP serverGitHub-verified authorLocal · PyPI | 0 | MIT | ||
| ICOS carbon and greenhouse-gas observations ICOS atmosphere, ocean and ecosystem greenhouse-gas observations, with citation and DOI per answer MCP serverVerified domain · icos-cp.euRemote● LiveFree to try | 0 | GPL-3.0 | ||
| Idigbio iDigBio biodiversity specimen MCP. MCP serverBulk publisher · 1,915 entriesGitHub-verified authorLocal · npm | 0 | MIT | ||
| Inaturalist iNaturalist MCP — citizen-science species observations (free, no auth for read-only) MCP serverBulk publisher · 1,915 entriesGitHub-verified authorLocal · npm | 0 | MIT | ||
| io.github.Ansvar-Systems/uk-crop-nutrients UK crop nutrient recommendations — RB209 NPK planning, soil types, commodity prices MCP serverGitHub-verified authorRemoteDown | — | — | ||
| io.github.Ansvar-Systems/uk-livestock UK livestock welfare, feed, health, and movement rules — 8 species, DEFRA codes MCP serverGitHub-verified authorRemoteDown | — | — | ||
| io.github.Ansvar-Systems/uk-organic-regen UK organic and regenerative farming — certification, cover crops, soil health, BNG MCP serverGitHub-verified authorRemoteDown | — | — | ||
| io.github.bitMacrocode/charm OEM automotive repair data - part numbers, torque specs, procedures for 1982-2013 vehicles. MCP serverGitHub-verified authorRemote● LiveFree to try | 0 | MIT | ||
| io.github.ciinkwia/lithium-vault-mcp Primary-source lithium & battery-metals mining data (AISC, reserves, filings) via x402. MCP serverGitHub-verified authorLocal · npm | 0 | MIT | ||
| io.github.CloudCorpRecords/glazemath Ceramic glaze chemistry: unity formulas, limit checks, substitutes, recipes, shelf and firing logs. MCP serverBulk publisher · 430 entriesGitHub-verified authorLocal · npm | 0 | MIT | ||
| io.github.CloudCorpRecords/porefind Search lab-filtration products by specification, with prices and lead times. MCP serverBulk publisher · 430 entriesGitHub-verified authorLocal · npm | 0 | MIT | ||
| io.github.CloudCorpRecords/scicompute Scientific computation: named tensors, matrix algebra and vector operations, fully local. MCP serverBulk publisher · 430 entriesGitHub-verified authorLocal · npm | 0 | MIT | ||
| io.github.daedalus/mcp-number-theory MCP server exposing number theory functions and factorization algorithms MCP serverGitHub-verified authorLocal · PyPI | 0 | MIT | ||
| io.github.daedalus/mcp-qiskit MCP server exposing Qiskit 2.3.1 quantum computing functionality MCP serverGitHub-verified authorLocal · PyPI | 0 | MIT | ||
| io.github.daedalus/mcp-sympy MCP server that exposes SymPy's symbolic mathematics functionality MCP serverGitHub-verified authorLocal · PyPI | 0 | MIT | ||
| io.github.gabrielmahia/kilimo-mcp Kenya farming guides: crop calendar, fertilizer, pests, market timing, varieties, input costs. MCP serverGitHub-verified authorLocal · PyPI | 0 | MIT | ||
| io.github.gabrielmahia/mazingira-mcp Kenya environment guides: NEMA permits, climate data sources, protected areas, climate adaptation. MCP serverGitHub-verified authorLocal · PyPI | 0 | MIT | ||
| io.github.meszarosjan/steel-metallurgy-material-simulator-mcp No-key MCP server for steel equilibrium, TTT/CCT kinetics, phase-boundary and measured-data tools. MCP serverGitHub-verified authorLocal · npm | — | — | ||
| io.github.mrfentmen/a2l-mcp ASAM A2L MCP: parse ECU calibration files, validate blocks, measurements and names. MCP serverBulk publisher · 2,055 entriesGitHub-verified authorLocal · npm | 0 | — | ||
| io.github.mrfentmen/biopax-mcp BioPAX MCP: parse RDF models, validate objects, IDs and pathway classes. MCP serverBulk publisher · 2,055 entriesGitHub-verified authorLocal · npm | 0 | — | ||
| io.github.mrfentmen/care-label-mcp Care Label MCP: parse GINETEX codes, validate wash, bleach, dry and iron steps. MCP serverBulk publisher · 2,055 entriesGitHub-verified authorLocal · npm | 0 | — | ||
| io.github.mrfentmen/cellml-mcp CellML MCP: parse models, validate components, variables and units. MCP serverBulk publisher · 2,055 entriesGitHub-verified authorLocal · npm | 0 | — | ||
| io.github.mrfentmen/chempirical-mcp MCP server for Chempirical: search 48,000 com MCP: real tools for real work. MCP serverBulk publisher · 2,055 entriesGitHub-verified authorLocal · npm | 0 | — | ||
| io.github.mrfentmen/cif-mcp CIF MCP: parse crystal data blocks, tags and loops with column checks. MCP serverBulk publisher · 2,055 entriesGitHub-verified authorLocal · npm | 0 | — | ||
| io.github.mrfentmen/cml-mcp CML MCP: parse Chemical Markup Language, validate atoms, bonds and elements. MCP serverBulk publisher · 2,055 entriesGitHub-verified authorLocal · npm | 0 | — | ||
| io.github.mrfentmen/envirocar-mcp enviroCar open environmental car tracking data. MCP serverBulk publisher · 2,055 entriesGitHub-verified authorLocal · npm | — | — | ||
| io.github.mrfentmen/gff3-mcp GFF3 MCP: parse annotations, validate columns, ranges, strands and attributes. MCP serverBulk publisher · 2,055 entriesGitHub-verified authorLocal · npm | 0 | — | ||
| io.github.mrfentmen/ieee2030-5-mcp IEEE 2030.5 MCP: parse smart energy resources, validate hrefs and poll rates. MCP serverBulk publisher · 2,055 entriesGitHub-verified authorLocal · npm | 0 | — | ||
| io.github.mrfentmen/inci-mcp INCI MCP: parse cosmetic ingredient lists, validate names and duplicates. MCP serverBulk publisher · 2,055 entriesGitHub-verified authorLocal · npm | 0 | — | ||
| io.github.mrfentmen/kgml-mcp KGML MCP: parse KEGG pathways, validate entries, relations and reactions. MCP serverBulk publisher · 2,055 entriesGitHub-verified authorLocal · npm | 0 | — | ||
| io.github.mrfentmen/ls-dyna-mcp LS-DYNA MCP: parse keyword files, validate nodes, elements and connectivity. MCP serverBulk publisher · 2,055 entriesGitHub-verified authorLocal · npm | 0 | — | ||
| io.github.mrfentmen/mmcif-mcp mmCIF MCP: parse macromolecular CIF categories and atom site loops. MCP serverBulk publisher · 2,055 entriesGitHub-verified authorLocal · npm | 0 | — | ||
| io.github.mrfentmen/mol2-mcp MOL2 MCP: parse molecules, validate atoms, coordinates, bonds and counts. MCP serverBulk publisher · 2,055 entriesGitHub-verified authorLocal · npm | 0 | — | ||
| io.github.mrfentmen/mzidentml-mcp mzIdentML MCP: parse proteomics results, validate peptides, results and IDs. MCP serverBulk publisher · 2,055 entriesGitHub-verified authorLocal · npm | 0 | — | ||
| io.github.mrfentmen/mzxml-mcp mzXML MCP: parse mass spec runs, validate scans, msLevel and scan numbers. MCP serverBulk publisher · 2,055 entriesGitHub-verified authorLocal · npm | 0 | — | ||
| io.github.mrfentmen/namd-mcp NAMD MCP: parse configurations, validate commands, timestep and job control. MCP serverBulk publisher · 2,055 entriesGitHub-verified authorLocal · npm | 0 | — | ||
| io.github.mrfentmen/nastran-bdf-mcp Nastran MCP: parse BDF cards, validate grids, elements and ENDDATA. MCP serverBulk publisher · 2,055 entriesGitHub-verified authorLocal · npm | 0 | — | ||
| io.github.mrfentmen/neuroml-mcp NeuroML MCP: parse cells, populations and networks with size checks. MCP serverBulk publisher · 2,055 entriesGitHub-verified authorLocal · npm | 0 | — | ||
| io.github.mrfentmen/nwchem-mcp NWChem MCP: parse inputs, validate blocks, geometry and task lines. MCP serverBulk publisher · 2,055 entriesGitHub-verified authorLocal · npm | 0 | — | ||
| io.github.mrfentmen/pepxml-mcp pepXML MCP: parse search results, validate runs, spectrum queries and hits. MCP serverBulk publisher · 2,055 entriesGitHub-verified authorLocal · npm | 0 | — | ||
| io.github.mrfentmen/phylip-mcp PHYLIP MCP: parse alignments, validate taxa, site counts and names. MCP serverBulk publisher · 2,055 entriesGitHub-verified authorLocal · npm | 0 | — | ||
| io.github.mrfentmen/quantum-espresso-mcp Quantum ESPRESSO MCP: parse pw.x inputs, validate namelists and cards. MCP serverBulk publisher · 2,055 entriesGitHub-verified authorLocal · npm | 0 | — | ||
| io.github.mrfentmen/rinex-mcp RINEX MCP: parse GNSS observations, validate headers, epochs and satellites. MCP serverBulk publisher · 2,055 entriesGitHub-verified authorLocal · npm | 0 | — | ||
| io.github.mrfentmen/satnogs-mcp SatNOGS DB: satellite transmitter and observation data. MCP serverBulk publisher · 2,055 entriesGitHub-verified authorLocal · npm | — | — | ||
| io.github.mrfentmen/sbml-mcp SBML MCP: parse models, validate compartments, species and reaction references. MCP serverBulk publisher · 2,055 entriesGitHub-verified authorLocal · npm | 0 | — | ||
| io.github.mrfentmen/vcf-variants-mcp VCF MCP: parse variant records, read INFO/FORMAT fields, validate columns and summarize genotypes. MCP serverBulk publisher · 2,055 entriesGitHub-verified authorLocal · npm | 0 | — | ||
| io.github.mrfentmen/votable-mcp VOTable MCP: parse astronomy tables, validate fields, datatypes and rows. MCP serverBulk publisher · 2,055 entriesGitHub-verified authorLocal · npm | 0 | — | ||
| io.github.mrfentmen/xyz-mcp XYZ MCP: parse molecules, validate atom counts, elements and coordinates. MCP serverBulk publisher · 2,055 entriesGitHub-verified authorLocal · npm | 0 | — | ||
| io.github.toki0413/saturday-materials Materials computing tools for AI agents: structures, engines, phonons, EOS, NEB, sampling, lineage. MCP serverGitHub-verified authorLocal · npm | 0 | MIT | ||
| ivive.app Human hepatic clearance from in-vitro CLint, with the error band measured on known drugs. MCP serverVerified domain · ivive.appRemote● Live | — | — | ||
| Joinerycalc Exact joinery layouts for agents. Dovetails: tail and pin widths, positions, angles, router template MCP serverVerified domain · joinerycalc.comRemote● Live | — | — | ||
| Kweku Anansi Herbarium What the Kweku Anansi herbarium records about plants of West and Central Africa. Never a dose. MCP serverVerified domain · kwekuanansi.aiRemote● LiveFree to try | — | — | ||
| laboratory.love Lab results for phthalates and bisphenols in consumer products, plus crowdfunded testing. MCP serverVerified domain · laboratory.loveRemote● LiveFree to try | — | — | ||
| Leafsight Plant problem guides in 8 languages, plus your Leafsight plants and past assessments after sign-in MCP serverVerified domain · askleafsight.comRemote● LiveAPI key needed | — | — | ||
| Lemma Park Read-only: the open math problems Lemma Park's agents work on, every attempt, and how to join. MCP serverVerified domain · lemmapark.comRemote● LiveFree to try | — | — | ||
| LoadOptimizer Plan truck, container and pallet loads in 3D with a real optimization engine. MCP serverVerified domain · loadoptimizer.aiRemoteSign-in needed | — | — | ||
| Maker Machines Atlas Machine research, calculators and buying links; affiliate links may earn commission. MCP serverGitHub-verified authorRemote● LiveFree to try | — | — | ||
| Maven Bio Live intelligence for biopharma teams on drugs, trials, companies, deals, and source evidence MCP serverVerified domain · mavenbio.comRemoteSign-in needed | — | — | ||
| MCP for OpenFilters Design, simulate and optimize optical thin-film coatings with the OpenFilters engine. MCP serverGitHub-verified authorLocal · PyPI | 0 | GPL-2.0 | ||
| MDEngine MD workbench for agents: 13 analysis tools, renders, hosted GPU runs; LAMMPS + OpenMM. MCP serverVerified domain · forcefieldsilicon.comLocal · MCPB | 0 | — | ||
| Mellow Tapir Radio Spectrum Guide Explore likely radio services, channels, and emissions from 108 MHz to 1 GHz. MCP serverGitHub-verified authorLocal · Docker | 0 | GPL-3.0 | ||
| MIDAS CIVIL NX tools (MIDAS IT Europe) Build, check and report on MIDAS CIVIL NX bridge models and design tendons, with MIDAS IT plugins. MCP serverVerified domain · midasiteurope.comRemote● LiveAPI key needed | — | — | ||
| Millsheet: metals, resins and chemicals specified by grade; bulk CO2 supply planner Specify metals, resins, chemicals and gases by grade, and plan a bulk CO2 supply from your volume. MCP serverVerified domain · services.forevenza.comRemote● LiveFree to try | — | — | ||
| MVisionPro Engineering Tools Read-only machine-vision calculations for optics, interfaces, line scan, sensors, and models. MCP serverVerified domain · mvisionpro.comRemote● Live | — | — | ||
| Mychem MyChem.info MCP. Aggregated drug / chemical-compound annotation from the BioThings API: ChEMBL… MCP serverBulk publisher · 1,915 entriesGitHub-verified authorLocal · npm | 0 | MIT | ||
| Mydisease MyDisease.info MCP. Aggregated disease annotation from the BioThings ecosystem: MONDO/DOID/OMIM… MCP serverBulk publisher · 1,915 entriesGitHub-verified authorLocal · npm | 0 | MIT | ||
| Mygene Info MyGene.info MCP. Docs: https://docs.mygene.info/en/latest/ MCP serverBulk publisher · 1,915 entriesGitHub-verified authorLocal · npm | 0 | MIT | ||
| Myvariant MyVariant.info MCP. Aggregated human genetic-variant annotation: dbSNP, ClinVar clinical… MCP serverBulk publisher · 1,915 entriesGitHub-verified authorLocal · npm | 0 | MIT | ||
| Ncbi Datasets NCBI Datasets — the US National Library of Medicine's genome, gene and taxonomy reference service… MCP serverBulk publisher · 1,915 entriesGitHub-verified authorLocal · npm | 0 | MIT | ||
| Ncbi Eutils NCBI E-utilities MCP — federated Entrez search/fetch. MCP serverBulk publisher · 1,915 entriesGitHub-verified authorLocal · npm | 0 | MIT | ||
| Ncbi Variation dbSNP refSNP records and HGVS/SPDI/rsID normalization for human genetic variants, from NCBI… MCP serverBulk publisher · 1,915 entriesGitHub-verified authorLocal · npm | 0 | MIT | ||
| Nci Evs NCI Thesaurus concepts and the other cancer-research vocabularies served by NCI Enterprise… MCP serverBulk publisher · 1,915 entriesGitHub-verified authorLocal · npm | 0 | MIT | ||
| NEXO CAUSAL: perícia e ciência forense Perícia e ciência forense pelo mundo, em português: busca, artigos completos e glossário técnico. MCP serverVerified domain · nexocausal.eng.brRemote● LiveFree to try | 0 | — | ||
| Noirlab Datalab NOIRLab Astro Data Lab — datalab.noirlab.edu. MCP serverBulk publisher · 1,915 entriesGitHub-verified authorLocal · npm | 0 | MIT | ||
| NomyParts open data Read-only catalog of drone and eVTOL components: products, makers, specs and sources. MCP serverVerified domain · nomyparts.comRemote● LiveFree to try | — | — | ||
| Nrel NREL MCP — wraps the US National Renewable Energy Laboratory developer API MCP serverBulk publisher · 1,915 entriesGitHub-verified authorRemoteDown | 0 | MIT | ||
| Obis OBIS (Ocean Biodiversity Information System) MCP. MCP serverBulk publisher · 1,915 entriesGitHub-verified authorLocal · npm | 0 | MIT | ||
| OceanSphere Engines - marine equipment library Read-only marine equipment library: models, makers, categories, values with source labels. MCP serverVerified domain · engines.oceansphere.ioRemote● LiveFree to try | — | — | ||
| OpenFab Instant parametric cost estimates for custom manufacturing: CNC, molding, sheet metal, 3DP, PCB. MCP serverGitHub-verified authorRemote● Live | 0 | — | ||
| OpenMEP duct sizing Deterministic HVAC duct sizing at a fixed or Manual D friction rate; grades existing ducts. MCP serverGitHub-verified authorLocal · npm | 0 | MIT | ||
| OrbitEOS Energy Management Energy management platform — 61 tools for solar, battery, grid, and EV charging control MCP serverGitHub-verified authorRemoteDown | — | — | ||
| Panya — peptide vendor matchmaker Peptide vendor matchmaker. 11-signal rubric, GLP-1 + 25 peptides, region-aware, free. MCP serverGitHub-verified authorRemoteDown | — | — | ||
| PerfuMate Perfumery materials, IFRA Category 4, EU allergens, and your formulas and shelf via OAuth. MCP serverVerified domain · perfumate.appRemote● Live | — | — | ||
| PlanElec Plan Belgian electrical installations (AREI/RGIE): projects, circuits, boards. Needs PlanElec Pro. MCP serverVerified domain · planelec.beRemoteSign-in needed | — | — | ||
| PlanElec Calculators Free AREI cable sizing, Synergrid C10/26 inverter check, LED strip calculator. No account. MCP serverVerified domain · planelec.beRemote● LiveFree to try | — | — | ||
| Planetary Computer Earth-observation imagery catalogue from Microsoft's Planetary Computer — search its open… MCP serverBulk publisher · 1,915 entriesGitHub-verified authorLocal · npm | 0 | MIT | ||
| Predictive Maintenance Industrial vibration analysis, bearing fault diagnosis, ISO 20816, and ML anomaly detection MCP serverGitHub-verified authorLocal · PyPI | — | — | ||
| Pride EBI PRIDE Archive MCP — proteomics (mass-spectrometry) data repository. Keyless. Wraps the public… MCP serverBulk publisher · 1,915 entriesGitHub-verified authorLocal · npm | 0 | MIT | ||
| Programación Siemens — Blog y Cursos Guías en español de PLC Siemens y TIA Portal: busca y lee +330 tutoriales (SCL, LADDER, AWL, HMI). MCP serverVerified domain · programacionsiemens.comRemote● LiveFree to try | — | — | ||
| Protein Atlas Human Protein Atlas (HPA) MCP — keyless. MCP serverBulk publisher · 1,915 entriesGitHub-verified authorLocal · npm | 0 | MIT | ||
| PT Chart PT chart lookups, superheat/subcooling calculators, and diagnostics for HVAC technicians. MCP serverGitHub-verified authorRemote● LiveFree to try | — | — | ||
| Pubchem PubChem MCP — NIH chemistry compound database (no auth) MCP serverBulk publisher · 1,915 entriesGitHub-verified authorLocal · npm | 0 | MIT | ||
| Pvgis PVGIS MCP — EU Joint Research Centre PV system modeler MCP serverBulk publisher · 1,915 entriesGitHub-verified authorLocal · npm | 0 | MIT | ||
| QuailOS Farm management for poultry, quail & egg farms: flocks, eggs, hatches, orders, tasks, calendar. MCP serverVerified domain · quailos.comRemote● LiveAPI key needed | — | — | ||
| Quickgo QuickGO (EBI) MCP — Gene Ontology browser. MCP serverBulk publisher · 1,915 entriesGitHub-verified authorLocal · npm | 0 | MIT | ||
| Raw to Cooked Weight MCP Raw to cooked weight of meat and poultry by cut and cooking method from USDA cooking yields. MCP serverBulk publisher · 408 entriesGitHub-verified authorRemote● LiveFree to try | 0 | MIT | ||
| Rcsb Pdb RCSB PDB MCP — experimentally determined macromolecular structures. MCP serverBulk publisher · 1,915 entriesGitHub-verified authorLocal · npm | 0 | MIT | ||
| Reactome Reactome MCP — open biological pathway knowledge-base. MCP serverBulk publisher · 1,915 entriesGitHub-verified authorLocal · npm | 0 | MIT | ||
| RegusciLabs Documentation Read public lab info, news and curated social activity; no private data or write actions. MCP serverVerified domain · www.reguscilabs.comRemote● LiveFree to try | — | — | ||
| RegusciLabs Innovation Lab Read lab info, news and curated social posts; send approved inquiries and consented Pulse signups. MCP serverVerified domain · www.reguscilabs.comRemote● LiveFree to try | — | — | ||
| RFQdecoder Should-cost of a machined, sheet metal or cast part from its PDF, DXF or STEP drawing, line by line. MCP serverGitHub-verified authorRemoteSign-in needed | — | — | ||
| ROFilter - Reverse Osmosis Membrane System Design Reverse osmosis membrane system design software, also available as an MCP server. MCP serverVerified domain · rofilter.cnRemoteSign-in needed | — | — | ||
| RotoSpider Layout Rotomolding mold-on-arm layout feasibility: which molds fit on a machine arm/spider, and how. MCP serverVerified domain · mcp.cuberithm.comRemote● Live | — | — | ||
| SateAIs Satellite SAR analysis: ship, oil slick, building change, and time-series change detection MCP serverVerified domain · spcsft.comRemoteSign-in needed | — | — | ||
| SCAPS-1D Design, simulate, fit and sanity-check thin-film solar cells with SCAPS-1D on your own installation. MCP serverGitHub-verified authorLocal · PyPI | 0 | MIT | ||
| ScienceToStartup Buildability Oracle Signed Buildability Oracle for AI-for-science papers. ed25519 receipts, Wave proofs, divergence. MCP serverGitHub-verified authorRemoteDown | — | — | ||
| scienX Protein protocol counts, CRO evidence and off-the-shelf listings from scienX. MCP serverVerified domain · scienx.siteRemote● LiveFree to try | — | — | ||
| Scopture Work on physical engineering projects, inspect CAD/BIM, run simulations, and manage project context MCP serverGitHub-verified authorRemoteSign-in needed | 0 | MIT | ||
| Sgd SGD (Saccharomyces Genome Database) MCP. MCP serverBulk publisher · 1,915 entriesGitHub-verified authorLocal · npm | 0 | MIT | ||
| Show, Don't Code Lab video or protocols.io protocol to a simulator-checked Opentrons Flex/OT-2 protocol MCP serverGitHub-verified authorRemoteDown | 0 | MIT | ||
| Simple Lab Tools Label Maker Create printable cryogenic lab, sample, tube and QR label sheets. Six templates; free, no login. MCP serverGitHub-verified authorRemote● LiveFree to try | — | — | ||
| Simpson Strong-Tie Agent Construction product lookup for Simpson Strong-Tie structural catalog MCP serverGitHub-verified authorRemoteDown | — | — | ||
| SkoIA Parts Resolve part problems, check compatibility and identify only the information still missing. MCP serverGitHub-verified authorRemote● LiveFree to try | — | — | ||
| SolarSENS Read-only access to authorized SolarSENS solar plants, performance, devices, and alarms. MCP serverVerified domain · solarsens.coRemoteSign-in needed | — | — | ||
| Solvion Heating Energy Engineering Heating, ventilation and energy engineering calculations and diagnostics for AI agents. MCP serverVerified domain · solvion.ruRemoteDown | — | — | ||
| Sootcase freight CO2e Freight CO2e by road, rail, sea, inland waterway and air (GLEC, ISO 14083), every step shown MCP serverGitHub-verified authorRemote● LiveFree to try | — | — | ||
| Sparkel Quantity takeoff from PDF drawings and BIM/IFC: room areas, symbol counts, roof zones. MCP serverGitHub-verified authorRemoteSign-in needed | — | — | ||
| Steel Brain Trade-verified steel grade properties, substitution verdicts, and mill-cert guidance for AI agents. MCP serverGitHub-verified authorLocal · Docker | 0 | MIT | ||
| SuperhotGeo Superhot rock geothermal: well registry with failures at temperature, projects, research, RockLab. MCP serverVerified domain · superhotgeo.comRemote● LiveFree to try | — | — | ||
| Taminyaran Engineering MCP Engineering MCP for geosynthetics, waterproofing, drainage, ponds, foundations and tunnels. MCP serverGitHub-verified authorRemote● Live | — | — | ||
| TDA Logic by NanoBase™: Cosmetic Formulation Add-on for your AI: formulate leave-on cosmetics on the NanoBase™ raw material with TDA logic. MCP serverVerified domain · api.nanobaselabs.comRemoteSign-in needed | — | — |
Filters apply to the top 400 of 420 tools by stars. Full list for agents: life-science.json