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Cancer gene co-occurrence and exclusivity in tumour cohorts, with confound controls and exact tests.
Remote server: your requests and data go to cybergenic.im. Claude Code: claude mcp add --transport http cybergenic https://cybergenic.im/mcp?via=mcpregistry · Claude app: Settings → Connectors → Add custom connector.
The tools this server listed when we connected to it, in its own words.
lookup_gene_pair — Measured co-alteration statistics for two genes in every tumour cohort where Cybergenic's discovery scan tested the pair: tumours with both gene_partners — The genes whose driver mutations co-occur with, or are mutually exclusive with, a given gene in patient tumours, strongest first by Benjaminsearch_findings — Search Cybergenic's published findings: gene-pair co-occurrence and mutual exclusivity, survival associations, CRISPR gene dependencies and get_finding — The full record of one Cybergenic finding, by id or permalink: what was measured and in which cohort, the statistics (the 2x2 table, odds raget_track_record — Cybergenic's live track record: how many predictions it has locked in its hash-chained registry before re-testing them, how many replicated fisher_exact_test — Fisher's exact test for a 2x2 table [[a, b], [c, d]]: two-sided and both one-sided p-values (computed in log space, so a tiny p keeps its rechi_square_test — Pearson chi-square test of independence for an r x c table of counts (2x2 up to 10x10), with Yates' correction for 2x2 tables and the G-testodds_ratio_relative_risk — Effect sizes for a 2x2 table [[a, b], [c, d]] whose rows are two groups and whose columns are outcome yes and no: the odds ratio (Woolf intefdr_correction — Multiple-testing correction for a list of p-values: Benjamini-Hochberg q-values and Benjamini-Yekutieli, Holm, Hochberg and Bonferroni adjusNot tested by KitScout yet. When our harness runs it, pros, cons and the tasks we tried appear here, with the date and evidence.